SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001136153
Gene Symbol: ATF6B

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.32115820C>T COSM3348307 RKO [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-891a-3p gcaaTGCCACaggtg AGUGGCAC m6b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-1179 gcAATGCTacaggtg AAGCAUUC m6b Created HPSD3_8888_G11965.1_32083583
hsa-miR-1256 gCAATGCCacaggtg AGGCAUUG m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-3137 gcaatGCTACAGgtg UCUGUAGC m7b Created HPSD3_8888_G11965.1_32083583
hsa-miR-3688-5p gcaaTGCCACaggtg AGUGGCAA m6b Disrupted HPSD3_8888_G11965.1_32083583

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32115801G>A COSM1621476 HCC143 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4756-3p cttgccaATCTCTGc CCAGAGAU m7b Created HPSD3_8888_G11965.1_32083583
hsa-miR-5186 cttgcCAATCTCTgc AGAGAUUG m8a Created HPSD3_8888_G11965.1_32083583
hsa-miR-873-3p cttgcCAGTCTCtgc GGAGACUG m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-182-5p cTTGCCAAtctctgc UUUGGCAA m7b Created HPSD3_8888_G11965.1_32083583
hsa-miR-4463 cttgCCAGTCTCtgc GAGACUGG m8a Disrupted HPSD3_8888_G11965.1_32083583

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32115794C>T COSM4640712 LIM1899 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4797-5p gtCTCTGTagccagc GACAGAGU m6b Created HPSD3_8888_G11965.1_32083583
hsa-miR-4794 gtctctgTAGCCAGc UCUGGCUA m7b Created HPSD3_8888_G11965.1_32083583
hsa-miR-3919 gTCTCTGCagccagc GCAGAGAA m7a Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-3678-3p gtCTCTGCAGccagc CUGCAGAG m8a Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-3158-5p gtcTCTGCAGccagc CCUGCAGA m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-3064-5p gtctctgCAGCCAGc UCUGGCUG m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-2467-3p gtCTCTGCagccagc AGCAGAGG m6b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-187-5p gtctcTGTAGCCagc GGCUACAA m7a Created HPSD3_8888_G11965.1_32083583
hsa-miR-664a-5p gtctctgTAGCCAGc ACUGGCUA m7b Created HPSD3_8888_G11965.1_32083583
hsa-miR-6504-5p gtctctgCAGCCAGc UCUGGCUG m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-647 gtctctGCAGCCAgc GUGGCUGC m7b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-604 gtctctGCAGCCagc AGGCUGCG m6b Disrupted HPSD3_8888_G11965.1_32083583
hsa-miR-548v gtctCTGTAGCcagc AGCUACAG m7b Created HPSD3_8888_G11965.1_32083583

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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