SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001135703
Gene Symbol: LRP12

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.104497936C>T COSM3884544 TCGA-CG-5721-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1270 agcaaatTCTCCAac CUGGAGAU m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-4434 agcaaaTTCTCCaac AGGAGAAG m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-4516 agcaaaTTCTCCaac GGGAGAAG m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-4531 agcaaaTTCTCCAac AUGGAGAA m7b Created HPHES_8259_G11001.1_105510145
hsa-miR-5703 agcaaaTTCTCCaac AGGAGAAG m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-620 agcaaatTCTCCAac AUGGAGAU m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-6894-5p agcaaATCCTCCaac AGGAGGAU m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-7154-3p agcaaaTCCTCCaac AGGAGGAC m6b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-765 agcaaaTCCTCCAac UGGAGGAG m7a Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-766-5p agcaaaTCCTCCaac AGGAGGAA m6b Disrupted HPHES_8259_G11001.1_105510145

Mutation Mutation ID Sample Name Cancer Type
chr8:g.104497919T>C COSM603647 TCGA-44-6146-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p cTGCTGCTtttcaac UAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-15b-5p cTGCTGCTtttcaac UAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-16-5p cTGCTGCTtttcaac UAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-195-5p cTGCTGCTtttcaac UAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-3714 ctgCTGCCTTtcaac GAAGGCAG m7b Created HPHES_8259_G11001.1_105510145
hsa-miR-424-5p cTGCTGCTtttcaac CAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-488-3p ctgctgCCTTTCAAc UUGAAAGG m8a Created HPHES_8259_G11001.1_105510145
hsa-miR-497-5p cTGCTGCTtttcaac CAGCAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-548an ctgcTGCCTTTcaac AAAAGGCA m7b Created HPHES_8259_G11001.1_105510145
hsa-miR-548e-5p ctgcTGCTTTTcaac CAAAAGCA m7b Disrupted HPHES_8259_G11001.1_105510145
hsa-miR-5681a ctgctgCCTTTCaac AGAAAGGG m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-6730-5p ctgctgCCTTTCaac AGAAAGGU m6b Created HPHES_8259_G11001.1_105510145
hsa-miR-6838-5p cTGCTGCTTttcaac AAGCAGCA m8a (m8a->m7a) HPHES_8259_G11001.1_105510145

Mutation Mutation ID Sample Name Cancer Type
chr8:g.104497737C>T COSM200422 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30b-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30c-1-3p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30c-2-3p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3153 tttaatTTTCCCaat GGGGAAAG m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-3689a-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3689b-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3689c tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-450a-1-3p tttaattTTCCCAAt AUUGGGAA m7b Created HPHES_8258_G11000.1_105509979
hsa-miR-4516 tttaaTTCTCCCaat GGGAGAAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-4668-5p tttaaTTTTCCCaat AGGGAAAA m7b Created HPHES_8258_G11000.1_105509979
hsa-miR-6124 tttaaTTTTCCCaat GGGAAAAG m7a Created HPHES_8258_G11000.1_105509979
hsa-miR-6731-5p tttaatTCTCCCAat UGGGAGAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6733-5p tttaatTTTCCCAat UGGGAAAG m7a Created HPHES_8258_G11000.1_105509979
hsa-miR-6739-5p tttaatTTTCCCAat UGGGAAAG m7a Created HPHES_8258_G11000.1_105509979
hsa-miR-6779-5p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6788-5p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6878-5p tttaaTTCTCCCaat AGGGAGAA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-8085 tttaatTCTCCCAat UGGGAGAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-887-5p tttaattCTCCCAAt CUUGGGAG m7b Disrupted HPHES_8258_G11000.1_105509979

Mutation Mutation ID Sample Name Cancer Type
chr8:g.104497737C>A COSM1094663 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30b-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30c-1-3p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-30c-2-3p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3689a-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3689b-3p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-3689c tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-4516 tttaaTTCTCCCaat GGGAGAAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-5089-5p tttaattATCCCAat GUGGGAUU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-6513-5p tttaattATCCCAAt UUUGGGAU m7b Created HPHES_8258_G11000.1_105509979
hsa-miR-6731-5p tttaatTCTCCCAat UGGGAGAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6779-5p tttaattCTCCCAat CUGGGAGG m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6788-5p tttaatTCTCCCAat CUGGGAGA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-6878-5p tttaaTTCTCCCaat AGGGAGAA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-769-3p tttaattATCCCAat CUGGGAUC m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-8085 tttaatTCTCCCAat UGGGAGAG m7a Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-887-5p tttaattCTCCCAAt CUUGGGAG m7b Disrupted HPHES_8258_G11000.1_105509979

Mutation Mutation ID Sample Name Cancer Type
chr8:g.104497728A>G COSM1330388 TCGA-24-1845-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1261 cccaaTTATCCAgac AUGGAUAA m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-378a-3p cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378b cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378c cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378d cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378e cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378f cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378h cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378i cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-378j cccaattATCCAGac ACUGGAUU m6b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-422a cccaattGTCCAGac ACUGGACU m6b Created HPHES_8258_G11000.1_105509979
hsa-miR-4638-3p cccaatTGTCCAGac CCUGGACA m7b Created HPHES_8258_G11000.1_105509979
hsa-miR-4782-5p cccaattATCCAGAc UUCUGGAU m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-5706 cccaattATCCAGAc UUCUGGAU m7b Disrupted HPHES_8258_G11000.1_105509979
hsa-miR-7849-3p ccCAATTGTCcagac GACAAUUG m8a Created HPHES_8258_G11000.1_105509979

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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