SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001135254
Gene Symbol: PAX7

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.18636303C>T COSM1491927 TCGA-A3-3365-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3912-5p gatgaagTGGACAag AUGUCCAU m6b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-4436b-5p gatgAAGTGGACaag GUCCACUU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 gatgaAGCGGACaag GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-3912-5p gatgaagTGGACAag AUGUCCAU m6b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-4436b-5p gatgAAGTGGACaag GUCCACUU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 gatgaAGCGGACaag GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951

Mutation Mutation ID Sample Name Cancer Type
chr1:g.18636303C>A COSM3689217 TCGA-G4-6302-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1236-3p gatGAAGAGGacaag CCUCUUCC m7a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-2355-3p gatgaagAGGACAAg AUUGUCCU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-3909 gatgaAGAGGACAag UGUCCUCU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 gatgaAGCGGACaag GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6515-3p gaTGAAGAGgacaag UCUCUUCA m7b (m6b->m7b) HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-676-3p gatgaagAGGACAag CUGUCCUA m6b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6852-3p gatgaAGAGGACAag UGUCCUCU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6881-3p gatgAAGAGGAcaag AUCCUCUU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-877-3p gatGAAGAGGAcaag UCCUCUUC m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-1236-3p gatGAAGAGGacaag CCUCUUCC m7a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-2355-3p gatgaagAGGACAAg AUUGUCCU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-3909 gatgaAGAGGACAag UGUCCUCU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 gatgaAGCGGACaag GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6515-3p gaTGAAGAGgacaag UCUCUUCA m7b (m6b->m7b) HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-676-3p gatgaagAGGACAag CUGUCCUA m6b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6852-3p gatgaAGAGGACAag UGUCCUCU m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6881-3p gatgAAGAGGAcaag AUCCUCUU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-877-3p gatGAAGAGGAcaag UCCUCUUC m8a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951

Mutation Mutation ID Sample Name Cancer Type
chr1:g.18636302G>A COSM1176644 T155 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-5p ggatgAAACGGAcaa CUCCGUUU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 ggatgaAGCGGACaa GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-1468-5p ggatgAAACGGAcaa CUCCGUUU m7b Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-572 ggatgaAGCGGACaa GUCCGCUC m7a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951

Mutation Mutation ID Sample Name Cancer Type
chr1:g.18636297A>C COSM4750726 pfg043T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4793-5p gaggAGGATGaagcg ACAUCCUG m6b Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-5193 GAGGAGGAtgaagcg UCCUCCUC m8a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-5196-3p gagGAGGATGAagcg UCAUCCUC m8a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6877-3p gagGAGGCTGaagcg CAGCCUCU m7a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-4793-5p gaggAGGATGaagcg ACAUCCUG m6b Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-5193 GAGGAGGAtgaagcg UCCUCCUC m8a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-5196-3p gagGAGGATGAagcg UCAUCCUC m8a Disrupted HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951
hsa-miR-6877-3p gagGAGGCTGaagcg CAGCCUCU m7a Created HHHNH_2708_PAX7|NM_001135254|exon_CDS|-4.80993179641175|0.0849070155854951

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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