SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001130058
Gene Symbol: SLC44A5

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.75450321A>G COSN5744002 HX28T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6886-3p gaggGAAGGGCgcca UGCCCUUC m7b Created HPSD3_192_G263.1_75915996
hsa-miR-6789-3p gagggaaGGGCGCCa CGGCGCCC m7b Created HPSD3_192_G263.1_75915996
hsa-miR-6734-3p gaGGGAAGGGcgcca CCCUUCCC m8a Created HPSD3_192_G263.1_75915996
hsa-miR-566 gagggaaAGGCGCCa GGGCGCCU m7b Disrupted HPSD3_192_G263.1_75915996
hsa-miR-1249-3p gagggAAGGGCGcca ACGCCCUU m7b Created HPSD3_192_G263.1_75915996
hsa-miR-4446-5p gAGGGAAAggcgcca AUUUCCCU m7b Disrupted HPSD3_192_G263.1_75915996

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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