SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001113546
Gene Symbol: LIMA1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.50177192G>T COSM275859 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-506-5p tgCTGAATAattcac UAUUCAGG m7a (m6a->m7a) HPSD3_2558_G3422.1_50570983
hsa-miR-944 tgctgAATAATTcac AAAUUAUU m7b Created HPSD3_2558_G3422.1_50570983
hsa-miR-892c-5p tgCTGAATAattcac UAUUCAGA m7a (m6a->m7a) HPSD3_2558_G3422.1_50570983
hsa-miR-4452 tgctgaaGAATTCAc UUGAAUUC m7b Disrupted HPSD3_2558_G3422.1_50570983
hsa-miR-183-3p tgctgaaTAATTCAc GUGAAUUA m7b Created HPSD3_2558_G3422.1_50570983

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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