SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001100880
Gene Symbol: ST20

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.79899001C>T COSM3999612 SNUH_G10_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-5p gACACTCCAtattgt UGGAGUGU m8a (m8a->m7a) HPSLC_7270_G8593.1_80191342
hsa-miR-8076 gacacTCCATATtgt UAUAUGGA m7b Disrupted HPSLC_7270_G8593.1_80191342
hsa-miR-6514-5p gacACTCCATAttgt UAUGGAGU m8a Disrupted HPSLC_7270_G8593.1_80191342
hsa-miR-5586-3p gaCACTCTatattgt CAGAGUGA m6b Created HPSLC_7270_G8593.1_80191342
hsa-miR-504-3p gaCACTCCatattgt GGGAGUGC m6b Disrupted HPSLC_7270_G8593.1_80191342
hsa-miR-5583-3p gacactCCATATTgt GAAUAUGG m7b Disrupted HPSLC_7270_G8593.1_80191342

Mutation Mutation ID Sample Name Cancer Type
chr15:g.79898987G>A COSM196715 TCGA-AA-3864-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295a tgaaacCGGCCTAAt UUAGGCCG m8a Disrupted HPSLC_7270_G8593.1_80191342
hsa-miR-29b-1-5p tgAAACCAGCctaat GCUGGUUU m8a Created HPSLC_7270_G8593.1_80191342
hsa-miR-29b-2-5p tGAAACCAGcctaat CUGGUUUC m8a (m7a->m8a) HPSLC_7270_G8593.1_80191342
hsa-miR-3929 tgaaacCAGCCTaat GAGGCUGA m6b Created HPSLC_7270_G8593.1_80191342
hsa-miR-4430 tgaaaCCAGCCTaat AGGCUGGA m7a Created HPSLC_7270_G8593.1_80191342
hsa-miR-4419b tgaaacCAGCCTaat GAGGCUGA m6b Created HPSLC_7270_G8593.1_80191342
hsa-miR-4505 tgaaaCCAGCCTaat AGGCUGGG m7a Created HPSLC_7270_G8593.1_80191342
hsa-miR-4478 tgaaacCAGCCTaat GAGGCUGA m6b Created HPSLC_7270_G8593.1_80191342

Mutation Mutation ID Sample Name Cancer Type
chr15:g.79898986G>A COSM4623189 DLD1 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295a gaaacCGGCCTAAtt UUAGGCCG m8a Disrupted HPSLC_7270_G8593.1_80191342
hsa-miR-431-3p gaaacCGACCTaatt CAGGUCGU m6b Created HPSLC_7270_G8593.1_80191342

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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