SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001100814
Gene Symbol: TMEM55B

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr14:g.20459424A>T COSM4433406 431 [oesophagus][middle_third][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4754 ttcacaGTCCGCAct AUGCGGAC m7b Created HPKMB_2426_G2755.1_20927592
hsa-miR-6753-3p ttcACAGACCgcact UGGUCUGU m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-7107-3p ttcACAGACCgcact UGGUCUGU m7b Disrupted HPKMB_2426_G2755.1_20927592

Mutation Mutation ID Sample Name Cancer Type
chr14:g.20459421G>A COSM954257 TCGA-BS-A0UA-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p acagaccGCACTTTg AAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-106b-5p acagaccGCACTTTg UAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-17-5p acagaccGCACTTTg CAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-20a-5p acagaccGCACTTTg UAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-20b-5p acagaccGCACTTTg CAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-519d-3p acagaccGCACTTTg CAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-526b-3p acagaccGCACTTTg GAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-595 acagacCACACTTtg GAAGUGUG m7b Created HPKMB_2426_G2755.1_20927592
hsa-miR-6753-3p ACAGACCAcactttg UGGUCUGU m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-6848-3p acAGACCACactttg GUGGUCUC m7a (m6a->m7a) HPKMB_2426_G2755.1_20927592
hsa-miR-7107-3p ACAGACCAcactttg UGGUCUGU m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-93-5p acagaccGCACTTTg CAAAGUGC m7b Disrupted HPKMB_2426_G2755.1_20927592

Mutation Mutation ID Sample Name Cancer Type
chr14:g.20459414G>T COSM3377331 PCSI_0062_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-3p gcacTTTTGCacgtt AGCAAAAU m6b Created HPKMB_2426_G2755.1_20927592
hsa-miR-17-5p GCACTTTGgcacgtt CAAAGUGC m8a Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-19a-3p gcactTTTGCACgtt UGUGCAAA m7b Created HPKMB_2426_G2755.1_20927592
hsa-miR-19b-3p gcactTTTGCACgtt UGUGCAAA m7b Created HPKMB_2426_G2755.1_20927592
hsa-miR-20b-5p GCACTTTGgcacgtt CAAAGUGC m8a Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-519d-3p GCACTTTGgcacgtt CAAAGUGC m8a Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-520g-3p gCACTTTGgcacgtt ACAAAGUG m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-520h gCACTTTGgcacgtt ACAAAGUG m7b Disrupted HPKMB_2426_G2755.1_20927592
hsa-miR-548aj-5p gcaCTTTTGCAcgtt UGCAAAAG m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-548aw gcacTTTTGCACgtt GUGCAAAA m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-548az-5p gCACTTTTGcacgtt CAAAAGUG m8a (m7a->m8a) HPKMB_2426_G2755.1_20927592
hsa-miR-548f-5p gcaCTTTTGCAcgtt UGCAAAAG m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-548g-5p gcaCTTTTGCAcgtt UGCAAAAG m8a Created HPKMB_2426_G2755.1_20927592
hsa-miR-548t-5p gCACTTTTGcacgtt CAAAAGUG m8a (m7a->m8a) HPKMB_2426_G2755.1_20927592
hsa-miR-548x-5p gcaCTTTTGCAcgtt UGCAAAAG m8a Created HPKMB_2426_G2755.1_20927592

Mutation Mutation ID Sample Name Cancer Type
chr14:g.20458125C>T COSN1639518 RK133_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4329 gctctgGTCTCAGta CCUGAGAC m7b Created HPKMB_2424_G2754.1_20926280
hsa-miR-4649-3p gctctgGCCTCAGta UCUGAGGC m7b Disrupted HPKMB_2424_G2754.1_20926280
hsa-miR-4786-5p gctcTGGTCTCAgta UGAGACCA m8a Created HPKMB_2424_G2754.1_20926280
hsa-miR-6089 gctctGGCCTCagta GGAGGCCG m6b Disrupted HPKMB_2424_G2754.1_20926280
hsa-miR-4329 gctctgGTCTCAGta CCUGAGAC m7b Created HPKMB_2424_G2754.1_20926280
hsa-miR-4649-3p gctctgGCCTCAGta UCUGAGGC m7b Disrupted HPKMB_2424_G2754.1_20926280
hsa-miR-4786-5p gctcTGGTCTCAgta UGAGACCA m8a Created HPKMB_2424_G2754.1_20926280
hsa-miR-6089 gctctGGCCTCagta GGAGGCCG m6b Disrupted HPKMB_2424_G2754.1_20926280
hsa-miR-4329 gctctgGTCTCAGta CCUGAGAC m7b Created HPKMB_2424_G2754.1_20926280
hsa-miR-4649-3p gctctgGCCTCAGta UCUGAGGC m7b Disrupted HPKMB_2424_G2754.1_20926280
hsa-miR-4786-5p gctcTGGTCTCAgta UGAGACCA m8a Created HPKMB_2424_G2754.1_20926280
hsa-miR-6089 gctctGGCCTCagta GGAGGCCG m6b Disrupted HPKMB_2424_G2754.1_20926280

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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