SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001099639
Gene Symbol: ZNF146

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.36237209C>G COSM3822807 TCGA-AC-A23H-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p ccttgCTCTGCattt AGCAGAGG m6b Disrupted HPTK7_3742_G5468.1_36728106
hsa-miR-3120-3p ccTTGCTGTGcattt CACAGCAA m8a Created HPTK7_3742_G5468.1_36728106
hsa-miR-3678-3p ccttgCTCTGCAttt CUGCAGAG m7b Disrupted HPTK7_3742_G5468.1_36728106
hsa-miR-6501-3p cctTGCTCTGcattt CCAGAGCA m7b Disrupted HPTK7_3742_G5468.1_36728106

Mutation Mutation ID Sample Name Cancer Type
chr19:g.36237119C>T COSM130360 HN_62854 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4770 cTCATCTCtcactgt UGAGAUGA m7b Disrupted HPTK7_3741_G5467.1_36728014
hsa-miR-6088 cTCATCTCTcactgt AGAGAUGA m8a (m8a->m7a) HPTK7_3741_G5467.1_36728014
hsa-miR-143-3p cTCATCTCtcactgt UGAGAUGA m7b Disrupted HPTK7_3741_G5467.1_36728014

Mutation Mutation ID Sample Name Cancer Type
chr19:g.36237119C>G COSM1524627 TCGA-44-7660-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1245b-3p cTCATCTGtcactgt UCAGAUGA m7b Created HPTK7_3741_G5467.1_36728014
hsa-miR-4770 cTCATCTCtcactgt UGAGAUGA m7b Disrupted HPTK7_3741_G5467.1_36728014
hsa-miR-5190 ctcatctGTCACTGt CCAGUGAC m7b Created HPTK7_3741_G5467.1_36728014
hsa-miR-542-3p ctcatCTGTCACtgt UGUGACAG m7b Created HPTK7_3741_G5467.1_36728014
hsa-miR-5683 ctCATCTGTcactgt UACAGAUG m7b (m6b->m7b) HPTK7_3741_G5467.1_36728014
hsa-miR-6088 cTCATCTCTcactgt AGAGAUGA m8a (m8a->m7a) HPTK7_3741_G5467.1_36728014

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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