SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001098268
Gene Symbol: LIG4
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210643A>G COSM3710998 44T [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7112-3p tttcataGTGATGCt UGCAUCAC m7b Created HPTA3_5880_G9065.1_108862988
hsa-miR-34c-3p tttcaTAGTGATgct AAUCACUA m7b Created HPTA3_5880_G9065.1_108862988

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210632G>A COSM4554966 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-374b-3p tgCTGCTAAGttgca CUUAGCAG m8a Created HPTA3_5880_G9065.1_108862988
hsa-miR-374c-3p tgctGCTAAGTtgca CACUUAGC m7b Created HPTA3_5880_G9065.1_108862988
hsa-miR-424-5p TGCTGCTGagttgca CAGCAGCA m8a Disrupted HPTA3_5880_G9065.1_108862988
hsa-miR-4291 tgCTGCTGAgttgca UUCAGCAG m7b (m7b->m6b) HPTA3_5880_G9065.1_108862988
hsa-miR-922 tgCTGCTGagttgca GCAGCAGA m6b Disrupted HPTA3_5880_G9065.1_108862988
hsa-miR-891b tgctgctAAGTTGCa UGCAACUU m7b Created HPTA3_5880_G9065.1_108862988
hsa-miR-512-5p tgctGCTGAGTtgca CACUCAGC m7b Disrupted HPTA3_5880_G9065.1_108862988

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210080C>T COSM4846658 TCGA-JW-A5VL-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3690 accaatTCCAGGTag ACCUGGAC m7a Disrupted HPTA3_5879_G9064.1_108862430
hsa-miR-6128 accaATTCCAGgtag ACUGGAAU m7b Disrupted HPTA3_5879_G9064.1_108862430
hsa-miR-619-3p accaatTCCAGGTag GACCUGGA m7b Disrupted HPTA3_5879_G9064.1_108862430
hsa-miR-3140-5p accaatTTCAGGTag ACCUGAAU m7a Created HPTA3_5879_G9064.1_108862430
Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209768C>T COSM4896607 TCGA-RP-A695-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209760C>G COSM1158856 ICGC_0027 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4524a-3p atactCTGTCTCgtg UGAGACAG m7b Created HPTA3_5877_G9062.1_108862101
hsa-miR-4797-5p atACTCTGTCtcgtg GACAGAGU m8a Created HPTA3_5877_G9062.1_108862101

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209756C>T COSM4467904 CSCC-4-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4731-3p tctctCTTGTGTtgg CACACAAG m7b Created HPTA3_5877_G9062.1_108862101
hsa-miR-4801 tctctCTTGTGTtgg UACACAAG m7b Created HPTA3_5877_G9062.1_108862101

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser