SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001098268
Gene Symbol: LIG4
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209552G>A COSM3384716 8035735 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-3p taaaactAGCTGCAc UUGCAGCU m7b Created HPKMA_4216_G4951.1_108861904
hsa-miR-4328 tAAAACTGGctgcac CCAGUUUU m8a (m8a->m7a) HPKMA_4216_G4951.1_108861904
hsa-miR-4676-5p taaaACTGGCTgcac GAGCCAGU m7b Disrupted HPKMA_4216_G4951.1_108861904
hsa-miR-5047 taaaactAGCTGCAc UUGCAGCU m7b Created HPKMA_4216_G4951.1_108861904
hsa-miR-575 taaaACTGGCTgcac GAGCCAGU m7b Disrupted HPKMA_4216_G4951.1_108861904
hsa-miR-7156-3p taaaactGGCTGCAc CUGCAGCC m7b Disrupted HPKMA_4216_G4951.1_108861904
Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209539G>A COSM1677789 TK10 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209531C>G COSM4045840 TCGA-EQ-5647-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3690 tttTCCAGGaattga ACCUGGAC m6b Created HPKMA_4216_G4951.1_108861904
hsa-miR-3677-3p ttttCCACGAattga CUCGUGGG m6b Disrupted HPKMA_4216_G4951.1_108861904
hsa-miR-1343-3p ttttCCAGGAattga CUCCUGGG m6b Created HPKMA_4216_G4951.1_108861904
hsa-miR-4254 tttTCCAGGaattga GCCUGGAG m6b Created HPKMA_4216_G4951.1_108861904
hsa-miR-875-3p tTTTCCAGGaattga CCUGGAAA m8a (m7a->m8a) HPKMA_4216_G4951.1_108861904

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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