SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001098268
Gene Symbol: LIG4
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210343G>T COSM696070 TCGA-22-1002-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3925-5p actgaagGTTCTCTt AAGAGAAC m7b Disrupted HHRBL_4420_BCBL1-2of3-SCL_9003
hsa-miR-589-5p actgaaGGTTCTCtt UGAGAACC m7b Disrupted HHRBL_4420_BCBL1-2of3-SCL_9003

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209047G>A COSM3688593 TCGA-AM-5820-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519d-3p cagcctCACTTTatg CAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-518f-3p cagcctCGCTTTatg GAAAGCGC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-518d-3p cagcctCGCTTTatg CAAAGCGC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-518c-3p cagcctCGCTTTatg CAAAGCGC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-518b cagcctCGCTTTatg CAAAGCGC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-518a-3p cagcctCGCTTTatg GAAAGCGC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-5590-3p cagcctcACTTTATg AAUAAAGU m7b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-93-5p cagcctCACTTTatg CAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-548ah-5p cagccTCACTTTatg AAAAGUGA m7b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-526b-3p cagcctCACTTTatg GAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-106a-5p cagcctCACTTTatg AAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-142-5p cagcctcACTTTATg CAUAAAGU m7b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-17-5p cagcctCACTTTatg CAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-20b-5p cagcctCACTTTatg CAAAGUGC m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-3609 cagccTCACTTTatg CAAAGUGA m7b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-4316 caGCCTCACtttatg GGUGAGGC m7b (m6b->m7b) HHRBL_4419_BCBL1-2of3-SCL_6148

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209036C>T COSM4945532 RK227_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15b-3p tATGATTCatatgtg CGAAUCAU m7b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-551b-5p taTGATTTatatgtg GAAAUCAA m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-5580-3p tatgattCATATGTg CACAUAUG m7b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209015G>T COSM1365366 TCGA-AA-3510-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4677-5p aaccaAAGAACAttt UUGUUCUU m7b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-2116-5p aaccaAAGAACattt GGUUCUUA m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-22-5p aaccaAAGAACattt AGUUCUUC m6b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-5002-5p aACCAAATaacattt AAUUUGGU m7b Created HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-9-5p aACCAAAGAacattt UCUUUGGU m8a (m8a->m7a) HHRBL_4419_BCBL1-2of3-SCL_6148

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108209000G>A COSM4185613 BK0006 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6074 tgcccgTGAATATga GAUAUUCA m7b Disrupted HHRBL_4419_BCBL1-2of3-SCL_6148
hsa-miR-4699-3p tgcccGTAAATatga AAUUUACU m6b Created HHRBL_4419_BCBL1-2of3-SCL_6148

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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