SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001085357
Gene Symbol: BTLA

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.112471258C>T COSM460953 TCGA-DR-A0ZM-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3161 ctctaCTTATCActa CUGAUAAG m7b Created HPSD3_7092_G9525.1_112190103
hsa-miR-562 ctCTACTTatcacta AAAGUAGC m6b Created HPSD3_7092_G9525.1_112190103
hsa-miR-6869-5p ctCTACTCAtcacta GUGAGUAG m7b (m7b->m6b) HPSD3_7092_G9525.1_112190103

Mutation Mutation ID Sample Name Cancer Type
chr3:g.112465322G>A COSN8487904 1848_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-892c-5p ggcaTCTGAATAgtt UAUUCAGA m8a Disrupted HPSD3_7091_G9524.1_112184177
hsa-miR-1245b-3p ggCATCTGAatagtt UCAGAUGA m7a (m7a->m6a) HPSD3_7091_G9524.1_112184177
hsa-miR-8061 ggcATCTAAatagtt CUUAGAUU m6b Created HPSD3_7091_G9524.1_112184177
hsa-miR-3942-3p ggcATCTGAAtagtt UUUCAGAU m7b Disrupted HPSD3_7091_G9524.1_112184177

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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