SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001083606
Gene Symbol: PTCH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458245A>G COSM1555565 TCGA-55-7725-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7160-5p taCCTCAGCggcttg UGCUGAGG m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-7160-5p taCCTCAGCggcttg UGCUGAGG m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-7160-5p taCCTCAGCggcttg UGCUGAGG m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-7160-5p taCCTCAGCggcttg UGCUGAGG m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458243G>T COSM1111453 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.95458243G>A COSM1319558 TCGA-AB-2811-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1267 ccTCAACAGcttgcg CCUGUUGA m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-1267 ccTCAACAGcttgcg CCUGUUGA m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-1267 ccTCAACAGcttgcg CCUGUUGA m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536
hsa-miR-1267 ccTCAACAGcttgcg CCUGUUGA m7b (m6b->m7b) HPKMA_14861_G17213.1_98220536

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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