SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001083606
Gene Symbol: PTCH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.95449239G>A COSM14453 916816 [skin][face][carcinoma][basal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1228-5p gCCGCCCAgccacac GUGGGCGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3652 gccgcCCAGCCacac CGGCUGGA m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4430 gccgcCCAGCCacac AGGCUGGA m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4474-3p gccgcccAGCCACAc UUGUGGCU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4486 gcCGCCCAGCcacac GCUGGGCG m8a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4505 gccgCCCAGCCacac AGGCUGGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5589-5p gccgCCCAGCCacac GGCUGGGU m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5787 gccgCCCAGCCacac GGGCUGGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-647 gccgccCAGCCACac GUGGCUGC m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-663b gccgcccGGCCACac GGUGGCCC m6b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6842-3p gccgcCCAGCCAcac UUGGCUGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-7108-5p gccgcccGGCCACAc GUGUGGCC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409

Mutation Mutation ID Sample Name Cancer Type
chr9:g.95449232C>T COSM1463810 TCGA-D5-6927-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-210-3p ggccacACGCACAGc CUGUGCGU m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3607-5p ggcCACATGCacagc GCAUGUGA m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4666b ggccACATGCAcagc UUGCAUGU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5011-3p ggccaCATGCACagc GUGCAUGG m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-644a gGCCACACgcacagc AGUGUGGC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6821-5p ggccaCACGCACagc GUGCGUGG m7a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-7108-5p GGCCACACgcacagc GUGUGGCC m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-210-3p ggccacACGCACAGc CUGUGCGU m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3607-5p ggcCACATGCacagc GCAUGUGA m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4666b ggccACATGCAcagc UUGCAUGU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5011-3p ggccaCATGCACagc GUGCAUGG m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-644a gGCCACACgcacagc AGUGUGGC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6821-5p ggccaCACGCACagc GUGCGUGG m7a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-7108-5p GGCCACACgcacagc GUGUGGCC m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-210-3p ggccacACGCACAGc CUGUGCGU m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3607-5p ggcCACATGCacagc GCAUGUGA m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4666b ggccACATGCAcagc UUGCAUGU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5011-3p ggccaCATGCACagc GUGCAUGG m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-644a gGCCACACgcacagc AGUGUGGC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6821-5p ggccaCACGCACagc GUGCGUGG m7a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-7108-5p GGCCACACgcacagc GUGUGGCC m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-210-3p ggccacACGCACAGc CUGUGCGU m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3607-5p ggcCACATGCacagc GCAUGUGA m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4666b ggccACATGCAcagc UUGCAUGU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5011-3p ggccaCATGCACagc GUGCAUGG m7a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-644a gGCCACACgcacagc AGUGUGGC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6821-5p ggccaCACGCACagc GUGCGUGG m7a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-7108-5p GGCCACACgcacagc GUGUGGCC m8a Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409

Mutation Mutation ID Sample Name Cancer Type
chr9:g.95449205C>T COSM456289 TCGA-A2-A0ER-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-5p tccgacTTGGAGTat AACUCCAA m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3691-3p tccGACTTGGagtat ACCAAGUC m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4785 tCCGACTCggagtat AGAGUCGG m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5695 tccgaCTTGGAGTat ACUCCAAG m8a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3145-5p tccgacTTGGAGTat AACUCCAA m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3691-3p tccGACTTGGagtat ACCAAGUC m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4785 tCCGACTCggagtat AGAGUCGG m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5695 tccgaCTTGGAGTat ACUCCAAG m8a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3145-5p tccgacTTGGAGTat AACUCCAA m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3691-3p tccGACTTGGagtat ACCAAGUC m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4785 tCCGACTCggagtat AGAGUCGG m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5695 tccgaCTTGGAGTat ACUCCAAG m8a Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3145-5p tccgacTTGGAGTat AACUCCAA m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-3691-3p tccGACTTGGagtat ACCAAGUC m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-4785 tCCGACTCggagtat AGAGUCGG m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-5695 tccgaCTTGGAGTat ACUCCAAG m8a Created HHRBL_14912_BCBL1-2of3-SCL_13409

Mutation Mutation ID Sample Name Cancer Type
chr9:g.95449186G>A COSM327210 MOLT16 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][acute_lymphoblastic_T_cell_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1208 cccagacAACAGTGt UCACUGUU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1231 cCCAGACAacagtgt GUGUCUGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-632 ccCAGACAacagtgt GUGUCUGC m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6760-3p cccagacGACAGTGt ACACUGUC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1208 cccagacAACAGTGt UCACUGUU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1231 cCCAGACAacagtgt GUGUCUGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-632 ccCAGACAacagtgt GUGUCUGC m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6760-3p cccagacGACAGTGt ACACUGUC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1208 cccagacAACAGTGt UCACUGUU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1231 cCCAGACAacagtgt GUGUCUGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-632 ccCAGACAacagtgt GUGUCUGC m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6760-3p cccagacGACAGTGt ACACUGUC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1208 cccagacAACAGTGt UCACUGUU m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-1231 cCCAGACAacagtgt GUGUCUGG m7b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-632 ccCAGACAacagtgt GUGUCUGC m6b Created HHRBL_14912_BCBL1-2of3-SCL_13409
hsa-miR-6760-3p cccagacGACAGTGt ACACUGUC m7b Disrupted HHRBL_14912_BCBL1-2of3-SCL_13409

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser