SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080955
Gene Symbol: PLAGL1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.143941897T>G COSM1074084 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3927-3p caccactTCTACCTc CAGGUAGA m7b Disrupted HPKMA_13203_G15289.1_144263054
hsa-miR-4274 caccACTGCTacctc CAGCAGUC m6b Created HPKMA_13203_G15289.1_144263054
hsa-miR-4519 cacCACTGCTacctc CAGCAGUG m7b Created HPKMA_13203_G15289.1_144263054
hsa-miR-4650-3p caccacTTCTACCTc AGGUAGAA m8a Disrupted HPKMA_13203_G15289.1_144263054
hsa-miR-4795-5p caCCACTTCTacctc AGAAGUGG m8a Disrupted HPKMA_13203_G15289.1_144263054
hsa-miR-6499-3p cacCACTGCTacctc AGCAGUGU m7a Created HPKMA_13203_G15289.1_144263054
hsa-miR-6831-5p caccactTCTACCTc UAGGUAGA m7b Disrupted HPKMA_13203_G15289.1_144263054

Mutation Mutation ID Sample Name Cancer Type
chr6:g.143941727G>A COSM3621245 TCGA-EE-A20C-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-212-5p tgcCCAAGGagctgc ACCUUGGC m6b Disrupted HPKMA_13202_G15288.1_144262850
hsa-miR-3189-3p tgCCCAAGGagctgc CCCUUGGG m7b (m7b->m6b) HPKMA_13202_G15288.1_144262850
hsa-miR-4448 tgcccAAGGAGCtgc GGCUCCUU m7b Disrupted HPKMA_13202_G15288.1_144262850
hsa-miR-635 tGCCCAAGgagctgc ACUUGGGC m7b Disrupted HPKMA_13202_G15288.1_144262850
hsa-miR-6736-3p tgcccaaGGAGCTGc UCAGCUCC m7b Disrupted HPKMA_13202_G15288.1_144262850

Mutation Mutation ID Sample Name Cancer Type
chr6:g.143941724G>A COSM1074083 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2682-5p ccaaggaACTGCCTg CAGGCAGU m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-34b-5p ccaaggaACTGCCTg UAGGCAGU m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-4448 ccAAGGAGCtgcctg GGCUCCUU m7b (m7b->m6b) HPKMA_13202_G15288.1_144262850
hsa-miR-449c-5p ccaaggaACTGCCTg UAGGCAGU m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-4660 ccaagGAGCTGCctg UGCAGCUC m7b Disrupted HPKMA_13202_G15288.1_144262850
hsa-miR-548au-3p ccaaggAACTGCCtg UGGCAGUU m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-584-3p ccaaGGAACTGcctg UCAGUUCC m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-6736-3p ccaaGGAGCTGcctg UCAGCUCC m7b Disrupted HPKMA_13202_G15288.1_144262850

Mutation Mutation ID Sample Name Cancer Type
chr6:g.143941704A>C COSM4003712 SNUH_G22_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1178-5p gctgTGACCCTaaca CAGGGUCA m7b Created HPKMA_13202_G15288.1_144262850
hsa-miR-1182 gctgtGACCCTaaca GAGGGUCU m6b Created HPKMA_13202_G15288.1_144262850
hsa-miR-2909 gctgtgaCCCTAACa GUUAGGGC m7a Created HPKMA_13202_G15288.1_144262850

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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