SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080496
Gene Symbol: RGP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.35750946T>C COSM247029 PR-04-3113 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1275 acTCCCCCAtcactt GUGGGGGA m7b (m6b->m7b) HPTA3_18569_G29972.1_35750942
hsa-miR-4525 acTCCCCCatcactt GGGGGGAU m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-4665-5p acTCCCCCAtcactt CUGGGGGA m7b (m6b->m7b) HPTA3_18569_G29972.1_35750942
hsa-miR-4723-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-5010-5p acTCCCCCatcactt AGGGGGAU m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-5698 aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-625-5p acTCCCCCatcactt AGGGGGAA m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6824-5p acTCCCCTAtcactt GUAGGGGA m7b (m7b->m6b) HPTA3_18569_G29972.1_35750942
hsa-miR-6870-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-7111-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-1275 acTCCCCCAtcactt GUGGGGGA m7b (m6b->m7b) HPTA3_18569_G29972.1_35750942
hsa-miR-4525 acTCCCCCatcactt GGGGGGAU m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-4665-5p acTCCCCCAtcactt CUGGGGGA m7b (m6b->m7b) HPTA3_18569_G29972.1_35750942
hsa-miR-4723-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-5010-5p acTCCCCCatcactt AGGGGGAU m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-5698 aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-625-5p acTCCCCCatcactt AGGGGGAA m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6824-5p acTCCCCTAtcactt GUAGGGGA m7b (m7b->m6b) HPTA3_18569_G29972.1_35750942
hsa-miR-6870-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942
hsa-miR-7111-5p aCTCCCCCAtcactt UGGGGGAG m8a (m7a->m8a) HPTA3_18569_G29972.1_35750942

Mutation Mutation ID Sample Name Cancer Type
chr9:g.35750946T>A COSM3745996 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1343-5p aCTCCCCAatcactt UGGGGAGC m7a Created HPTA3_18569_G29972.1_35750942
hsa-miR-450a-2-3p acTCCCCAATcactt AUUGGGGA m8a Created HPTA3_18569_G29972.1_35750942
hsa-miR-6763-5p aCTCCCCAatcactt CUGGGGAG m7b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6810-5p acTCCCCAatcactt AUGGGGAC m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6824-5p acTCCCCTAtcactt GUAGGGGA m7b (m7b->m6b) HPTA3_18569_G29972.1_35750942
hsa-miR-6825-5p aCTCCCCAatcactt UGGGGAGG m7a Created HPTA3_18569_G29972.1_35750942
hsa-miR-8062 actccccAATCACTt CAGUGAUU m7b Created HPTA3_18569_G29972.1_35750942
hsa-miR-939-5p aCTCCCCAatcactt UGGGGAGC m7a Created HPTA3_18569_G29972.1_35750942
hsa-miR-1343-5p aCTCCCCAatcactt UGGGGAGC m7a Created HPTA3_18569_G29972.1_35750942
hsa-miR-450a-2-3p acTCCCCAATcactt AUUGGGGA m8a Created HPTA3_18569_G29972.1_35750942
hsa-miR-6763-5p aCTCCCCAatcactt CUGGGGAG m7b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6810-5p acTCCCCAatcactt AUGGGGAC m6b Created HPTA3_18569_G29972.1_35750942
hsa-miR-6824-5p acTCCCCTAtcactt GUAGGGGA m7b (m7b->m6b) HPTA3_18569_G29972.1_35750942
hsa-miR-6825-5p aCTCCCCAatcactt UGGGGAGG m7a Created HPTA3_18569_G29972.1_35750942
hsa-miR-8062 actccccAATCACTt CAGUGAUU m7b Created HPTA3_18569_G29972.1_35750942
hsa-miR-939-5p aCTCCCCAatcactt UGGGGAGC m7a Created HPTA3_18569_G29972.1_35750942

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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