SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080472
Gene Symbol: FITM2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.44311068C>T COSM4509862 CSCC-7-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3918 cctgGGCCCTGgtgg ACAGGGCC m7b Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337
hsa-miR-4685-5p cctggGCCCTGGtgg CCCAGGGC m7b Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337
hsa-miR-4733-3p cctgggcCCTGGTGg CCACCAGG m7b Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337
hsa-miR-6753-5p cctgggCCCTGGTGg CACCAGGG m8a Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337
hsa-miR-6837-5p cctggGCCCTGGTgg ACCAGGGC m8a Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337
hsa-miR-7160-3p cctGGGCCCTGgtgg CAGGGCCC m8a Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337

Mutation Mutation ID Sample Name Cancer Type
chr20:g.44311053G>T COSM4888598 OSCC-GB_00590111 [upper_aerodigestive_tract][mouth][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-338-3p cctccATGCTGGcgg UCCAGCAU m7b Disrupted HHRBL_9113_BCBL1-2of3-SCL_5337

Mutation Mutation ID Sample Name Cancer Type
chr20:g.44307197C>T COSM443863 TCGA-BH-A0B0-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p tctcctTCTGCCTtt GAGGCAGA m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-298 tctcCTTCTGCcttt AGCAGAAG m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-3714 tctccttCTGCCTTt GAAGGCAG m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-548aj-5p tctcCTTTTGCcttt UGCAAAAG m7b Created HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-548f-5p tctcCTTTTGCcttt UGCAAAAG m7b Created HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-548g-5p tctcCTTTTGCcttt UGCAAAAG m7b Created HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-548x-5p tctcCTTTTGCcttt UGCAAAAG m7b Created HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-6511a-5p tctcctTCTGCCTtt CAGGCAGA m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319

Mutation Mutation ID Sample Name Cancer Type
chr20:g.44307193C>G COSM1307429 TCGA-GV-A3QI-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p ctTCTGCCTttcatt GAGGCAGA m7b (m7b->m6b) HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-3714 cttCTGCCTTtcatt GAAGGCAG m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-488-3p cttctgCCTTTCAtt UUGAAAGG m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-548an cttcTGCCTTTcatt AAAAGGCA m7b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-5681a cttctgCCTTTCatt AGAAAGGG m6b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-6511a-5p ctTCTGCCTttcatt CAGGCAGA m7b (m7b->m6b) HHRBL_9112_BCBL1-2of3-SCL_14319
hsa-miR-6730-5p cttctgCCTTTCatt AGAAAGGU m6b Disrupted HHRBL_9112_BCBL1-2of3-SCL_14319

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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