SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080450
Gene Symbol: BEND3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.107068906A>G COSM3857270 TCGA-BR-8487-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-323b-5p cagtACAACCattcc AGGUUGUC m6b Disrupted HPTA3_16792_G26871.1_107390113
hsa-miR-3613-5p caGTACAACcattcc UGUUGUAC m7b (m7b->m6b) HPTA3_16792_G26871.1_107390113
hsa-miR-410-5p cagtACAACCattcc AGGUUGUC m6b Disrupted HPTA3_16792_G26871.1_107390113
hsa-miR-4718 caGTACAGCcattcc AGCUGUAC m7b (m6b->m7b) HPTA3_16792_G26871.1_107390113
hsa-miR-4790-3p cagtacaACCATTCc UGAAUGGU m7b Disrupted HPTA3_16792_G26871.1_107390113
hsa-miR-494-5p cagtACAACCattcc AGGUUGUC m6b Disrupted HPTA3_16792_G26871.1_107390113
hsa-miR-758-5p cagtaCAACCATtcc GAUGGUUG m7b Disrupted HPTA3_16792_G26871.1_107390113
hsa-miR-7974 cagtACAGCCattcc AGGCUGUG m6b Created HPTA3_16792_G26871.1_107390113
hsa-miR-889-5p cagtaCAGCCATTcc AAUGGCUG m8a Created HPTA3_16792_G26871.1_107390113

Mutation Mutation ID Sample Name Cancer Type
chr6:g.107068899C>T COSM200641 TCGA-AA-3864-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4323 accattcTGGGGCTt CAGCCCCA m7b Created HPTA3_16792_G26871.1_107390113

Mutation Mutation ID Sample Name Cancer Type
chr6:g.107068898G>A COSM1071814 TCGA-BS-A0TJ-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4308 ccatTCCAGGGcttg UCCCUGGA m7b Created HPTA3_16792_G26871.1_107390113
hsa-miR-6128 ccATTCCAGggcttg ACUGGAAU m7b (m6b->m7b) HPTA3_16792_G26871.1_107390113
hsa-miR-6779-3p ccattcCAGGGCTTg AAGCCCUG m8a Created HPTA3_16792_G26871.1_107390113
Mutation Mutation ID Sample Name Cancer Type
chr6:g.107068896GGG>AAG COSM4516768 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.107068895G>T COSM4886551 OSCC-GB_00580111 [upper_aerodigestive_tract][mouth][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3667-5p ttccGGGTCTTgcaa AAAGACCC m7b Created HPTA3_16792_G26871.1_107390113
hsa-miR-4696 ttccggGTCTTGCAa UGCAAGAC m8a Created HPTA3_16792_G26871.1_107390113

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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