SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001080432
Gene Symbol: FTO

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.53707528T>C COSN5800594 EOPC-03_tumor [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4466 aatgcaCCGCACCCt GGGUGCGG m8a Created HPSD3_3903_G5173.1_53741436
hsa-miR-4746-3p aatGCACCGCaccct AGCGGUGC m7b Created HPSD3_3903_G5173.1_53741436
hsa-miR-6499-3p aatgCACTGCaccct AGCAGUGU m6b Disrupted HPSD3_3903_G5173.1_53741436
hsa-miR-675-5p aatgcaCCGCACCct UGGUGCGG m7b Created HPSD3_3903_G5173.1_53741436
hsa-miR-143-5p aatgcACTGCACCct GGUGCAGU m8a Disrupted HPSD3_3903_G5173.1_53741436
hsa-miR-148a-3p aaTGCACTGcaccct UCAGUGCA m7b (m7b->m6b) HPSD3_3903_G5173.1_53741436
hsa-miR-148b-3p aaTGCACTGcaccct UCAGUGCA m7b (m7b->m6b) HPSD3_3903_G5173.1_53741436
hsa-miR-152-3p aaTGCACTGcaccct UCAGUGCA m7b (m7b->m6b) HPSD3_3903_G5173.1_53741436

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser