SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001080412
Gene Symbol: ZBTB38
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.141445413C>T COSM1039206 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4523 tTCTCGGTCatatgc GACCGAGA m8a (m7a->m8a) HPRT3_17474_G23230.1_141164250

Mutation Mutation ID Sample Name Cancer Type
chr3:g.141445411G>A COSM1419558 TCGA-CK-5913-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4251 acTTCTCAGccatat CCUGAGAA m7b (m6b->m7b) HPRT3_17474_G23230.1_141164250
hsa-miR-8077 acttCTCAGCCatat GGCUGAGU m7a Created HPRT3_17474_G23230.1_141164250
hsa-miR-889-5p acttctCAGCCATat AAUGGCUG m7b Created HPRT3_17474_G23230.1_141164250

Mutation Mutation ID Sample Name Cancer Type
chr3:g.141445396G>A COSM4114059 TCGA-HU-A4G8-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4781-3p ccccaCCAACATctt AAUGUUGG m7b Created HPRT3_17474_G23230.1_141164250
hsa-miR-541-3p cCCCACCAacatctt UGGUGGGC m7a Created HPRT3_17474_G23230.1_141164250
hsa-miR-654-5p cCCCACCAacatctt UGGUGGGC m7a Created HPRT3_17474_G23230.1_141164250
hsa-miR-6769b-5p cCCCACCAacatctt UGGUGGGU m7a Created HPRT3_17474_G23230.1_141164250

Mutation Mutation ID Sample Name Cancer Type
chr3:g.141443854C>A COSM4114051 TCGA-BR-8363-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-31-5p acatatcCTTGCCat AGGCAAGA m6b Disrupted HPRT3_17473_G23229.1_141162703
hsa-miR-6809-5p acatatCCTTGCCAt UGGCAAGG m8a Disrupted HPRT3_17473_G23229.1_141162703
hsa-miR-4791 aCATATCCttgccat UGGAUAUG m7b Disrupted HPRT3_17473_G23229.1_141162703

Mutation Mutation ID Sample Name Cancer Type
chr3:g.141442735T>C COSM4742138 T3724 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-642b-5p ctGGGAACatcgttc GGUUCCCU m6b Created HPRT3_17472_G23228.1_141161566
hsa-miR-642b-5p ctGGGAACatcgttc GGUUCCCU m6b Created HPRT3_17472_G23228.1_141161566

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser