SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077653
Gene Symbol: TBX20

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.35202461A>G COSM3638376 TCGA-ER-A19F-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3928-3p ctacgccGTTCCTCt GGAGGAAC m7b Created HPRT3_23936_G31975.1_35242060

Mutation Mutation ID Sample Name Cancer Type
chr7:g.35202459T>C COSM4441280 C113 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3125 acgccaTTCCTCTgc UAGAGGAA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-3916 acgccaTTCCTCTgc AAGAGGAA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-6757-5p acgcCATCCCTctgc UAGGGAUG m7b Created HPRT3_23936_G31975.1_35242060
hsa-miR-6847-5p acgccatTCCTCTGc ACAGAGGA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-6859-5p acgccaTTCCTCTgc GAGAGGAA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-6873-5p acgccaTCCCTCTGc CAGAGGGA m8a Created HPRT3_23936_G31975.1_35242060

Mutation Mutation ID Sample Name Cancer Type
chr7:g.35202455C>T COSM1739367 JEKO-1 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p cattCCTCTGCTgtg AGCAGAGG m8a Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-3120-3p cattcctTTGCTGTg CACAGCAA m7b Created HPRT3_23936_G31975.1_35242060
hsa-miR-3125 caTTCCTCTgctgtg UAGAGGAA m7b (m7b->m6b) HPRT3_23936_G31975.1_35242060
hsa-miR-3916 caTTCCTCTgctgtg AAGAGGAA m7b (m7b->m6b) HPRT3_23936_G31975.1_35242060
hsa-miR-545-3p cattccTTTGCTGtg UCAGCAAA m7b Created HPRT3_23936_G31975.1_35242060
hsa-miR-6847-5p catTCCTCTGctgtg ACAGAGGA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-6859-5p caTTCCTCTgctgtg GAGAGGAA m7b (m7b->m6b) HPRT3_23936_G31975.1_35242060
hsa-miR-922 cattccTCTGCTGtg GCAGCAGA m7b Disrupted HPRT3_23936_G31975.1_35242060

Mutation Mutation ID Sample Name Cancer Type
chr7:g.35202436T>G COSM3929031 TCGA-E1-5322-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4666a-3p cgccatTTGTATGac CAUACAAU m7a Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-485-3p cgccattTGTATGAc GUCAUACA m7b Disrupted HPRT3_23936_G31975.1_35242060
hsa-miR-539-3p cgccattTGTATGAc AUCAUACA m7b Disrupted HPRT3_23936_G31975.1_35242060

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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