SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077498
Gene Symbol: FAM222B

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758465G>A COSM3378110 PCSI_0079_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6893-3p gAGCAGGGaccgggg CCCUGCUG m7a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-671-3p gagcagGAACCGGgg UCCGGUUC m7b Created HPRT3_11318_G14991.1_27085493
hsa-miR-6070 gagcaGGAACCGGgg CCGGUUCC m8a Created HPRT3_11318_G14991.1_27085493
hsa-miR-4746-5p gagcaGGGACCGGgg CCGGUCCC m8a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-6893-3p gAGCAGGGaccgggg CCCUGCUG m7a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-671-3p gagcagGAACCGGgg UCCGGUUC m7b Created HPRT3_11318_G14991.1_27085493
hsa-miR-6070 gagcaGGAACCGGgg CCGGUUCC m8a Created HPRT3_11318_G14991.1_27085493
hsa-miR-4746-5p gagcaGGGACCGGgg CCGGUCCC m8a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-3074-5p gaGCAGGAACcgggg GUUCCUGC m8a Created HPRT3_11318_G14991.1_27085493
hsa-miR-3074-5p gaGCAGGAACcgggg GUUCCUGC m8a Created HPRT3_11318_G14991.1_27085493

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758460G>T COSM4065068 TCGA-CG-4436-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4746-5p GGGACCGGgggcggt CCGGUCCC m8a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-6840-5p gggaCCGGGGGcggt ACCCCCGG m7b Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-4746-5p GGGACCGGgggcggt CCGGUCCC m8a Disrupted HPRT3_11318_G14991.1_27085493
hsa-miR-6840-5p gggaCCGGGGGcggt ACCCCCGG m7b Disrupted HPRT3_11318_G14991.1_27085493

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758456C>T COSM173777 TCGA-AG-A02N-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4776-5p ccgggggTGGTCCAg GUGGACCA m7b Created HPRT3_11318_G14991.1_27085493
hsa-miR-6840-5p CCGGGGGTggtccag ACCCCCGG m8a Created HPRT3_11318_G14991.1_27085493
hsa-miR-3619-3p ccgggggTGGTCCag GGGACCAU m6b Created HPRT3_11318_G14991.1_27085493

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser