SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001077498
Gene Symbol: FAM222B

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758465G>A COSM3378110 PCSI_0079_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3074-5p gaGCAGGAACcgggg GUUCCUGC m8a Created HPRO7_1334_G2125.1_27085494
hsa-miR-6893-3p gAGCAGGGaccgggg CCCUGCUG m7a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-671-3p gagcagGAACCGGgg UCCGGUUC m7b Created HPRO7_1334_G2125.1_27085494
hsa-miR-671-3p gagcagGAACCGGgg UCCGGUUC m7b Created HPRO7_1334_G2125.1_27085494
hsa-miR-6893-3p gAGCAGGGaccgggg CCCUGCUG m7a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-6070 gagcaGGAACCGGgg CCGGUUCC m8a Created HPRO7_1334_G2125.1_27085494
hsa-miR-4746-5p gagcaGGGACCGGgg CCGGUCCC m8a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-3074-5p gaGCAGGAACcgggg GUUCCUGC m8a Created HPRO7_1334_G2125.1_27085494
hsa-miR-4746-5p gagcaGGGACCGGgg CCGGUCCC m8a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-6070 gagcaGGAACCGGgg CCGGUUCC m8a Created HPRO7_1334_G2125.1_27085494

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28758460G>T COSM4065068 TCGA-CG-4436-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6840-5p gggaCCGGGGGcggt ACCCCCGG m7b Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-4746-5p GGGACCGGgggcggt CCGGUCCC m8a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-4746-5p GGGACCGGgggcggt CCGGUCCC m8a Disrupted HPRO7_1334_G2125.1_27085494
hsa-miR-6840-5p gggaCCGGGGGcggt ACCCCCGG m7b Disrupted HPRO7_1334_G2125.1_27085494

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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