SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001048218
Gene Symbol: SCYL1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.65525642G>A COSM1355941 TCGA-AZ-6598-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6765-3p cCCAGGTGgccaaag UCACCUGG m7b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-588 cccagGTGGCCAAag UUGGCCAC m8a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-548s cccaggTGGCCAaag AUGGCCAA m6b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-4701-5p cccagGTGGCCAAag UUGGCCAC m8a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-4435 cccaggTGGCCAaag AUGGCCAG m6b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-6765-3p cCCAGGTGgccaaag UCACCUGG m7b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-588 cccagGTGGCCAAag UUGGCCAC m8a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-548s cccaggTGGCCAaag AUGGCCAA m6b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-4701-5p cccagGTGGCCAAag UUGGCCAC m8a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-4435 cccaggTGGCCAaag AUGGCCAG m6b Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-3187-3p cccaggTGGCCAAag UUGGCCAU m7a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-3187-3p cccaggTGGCCAAag UUGGCCAU m7a Disrupted HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214

Mutation Mutation ID Sample Name Cancer Type
chr11:g.65525614A>C COSM4922398 TCGA-G3-A3CK-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3186-5p gatgtGACGCCTGgc CAGGCGUC m8a Created HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214
hsa-miR-3186-5p gatgtGACGCCTGgc CAGGCGUC m8a Created HHHNA_4575_SCYL1|NM_001048218|exon_CDS|-4.60372587908353|0.87391018696214

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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