SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001048194
Gene Symbol: RCC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.28536829C>A COSM3943852 AOCS-125-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f ccaccctCATCTCCa GGAGAUGG m7a Disrupted HPTA1_116_G173.1_28863347
hsa-miR-143-3p ccacccTCATCTCca UGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-4770 ccacccTCATCTCca UGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-6088 ccacccTCATCTCca AGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-6804-5p cCACCCTCAtctcca UGAGGGUG m8a (m8a->m7a) HPTA1_116_G173.1_28863347
hsa-miR-1273f ccaccctCATCTCCa GGAGAUGG m7a Disrupted HPTA1_116_G173.1_28863347
hsa-miR-143-3p ccacccTCATCTCca UGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-4770 ccacccTCATCTCca UGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-6088 ccacccTCATCTCca AGAGAUGA m7b Disrupted HPTA1_116_G173.1_28863347
hsa-miR-6804-5p cCACCCTCAtctcca UGAGGGUG m8a (m8a->m7a) HPTA1_116_G173.1_28863347

Mutation Mutation ID Sample Name Cancer Type
chr1:g.28536816G>A COSM4170639 11_tFL [haematopoietic_and_lymphoid_tissue][lymph_node][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2116-5p gagAAGAACataccc GGUUCUUA m6b Created HPTA1_116_G173.1_28863347
hsa-miR-22-5p gaGAAGAACataccc AGUUCUUC m7b (m6b->m7b) HPTA1_116_G173.1_28863347
hsa-miR-4677-5p gagAAGAACAtaccc UUGUUCUU m7b Created HPTA1_116_G173.1_28863347
hsa-miR-567 gagaagAACATACcc AGUAUGUU m7b Created HPTA1_116_G173.1_28863347
hsa-miR-2116-5p gagAAGAACataccc GGUUCUUA m6b Created HPTA1_116_G173.1_28863347
hsa-miR-22-5p gaGAAGAACataccc AGUUCUUC m7b (m6b->m7b) HPTA1_116_G173.1_28863347
hsa-miR-4677-5p gagAAGAACAtaccc UUGUUCUU m7b Created HPTA1_116_G173.1_28863347
hsa-miR-567 gagaagAACATACcc AGUAUGUU m7b Created HPTA1_116_G173.1_28863347

Mutation Mutation ID Sample Name Cancer Type
chr1:g.28535977C>A COSM907984 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f CCATCTCCcatgagg GGAGAUGG m8a Disrupted HPTA1_115_G172.1_28862480
hsa-miR-30c-1-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-30c-2-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-3607-5p ccatcTCACATGagg GCAUGUGA m7b Created HPTA1_115_G172.1_28862480
hsa-miR-6788-5p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-6871-5p ccatCTCCCATGagg CAUGGGAG m8a Disrupted HPTA1_115_G172.1_28862480
hsa-miR-6878-5p ccaTCTCCCatgagg AGGGAGAA m6b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-1273f CCATCTCCcatgagg GGAGAUGG m8a Disrupted HPTA1_115_G172.1_28862480
hsa-miR-30c-1-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-30c-2-3p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-3607-5p ccatcTCACATGagg GCAUGUGA m7b Created HPTA1_115_G172.1_28862480
hsa-miR-6788-5p ccaTCTCCCAtgagg CUGGGAGA m7b Disrupted HPTA1_115_G172.1_28862480
hsa-miR-6871-5p ccatCTCCCATGagg CAUGGGAG m8a Disrupted HPTA1_115_G172.1_28862480
hsa-miR-6878-5p ccaTCTCCCatgagg AGGGAGAA m6b Disrupted HPTA1_115_G172.1_28862480

Mutation Mutation ID Sample Name Cancer Type
chr1:g.28535971C>T COSM315467 S01512 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cctttgCCATCTCCc GGAGAUGG m8a Disrupted HPTA1_115_G172.1_28862480

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser