SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001048194
Gene Symbol: RCC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.28537965C>T COSM4031204 TCGA-BR-A4QL-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4728-3p gcgggggTCAGCATa CAUGCUGA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-4750-3p gcggGGGTCAGcata CCUGACCC m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-628-5p gcggggGTCAGCATa AUGCUGAC m8a Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-6859-3p gcGGGGGTCAgcata UGACCCCC m8a Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-874-5p gcgGGGGCCagcata CGGCCCCA m6b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-4728-3p gcgggggTCAGCATa CAUGCUGA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-4750-3p gcggGGGTCAGcata CCUGACCC m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-628-5p gcggggGTCAGCATa AUGCUGAC m8a Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-6859-3p gcGGGGGTCAgcata UGACCCCC m8a Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-874-5p gcgGGGGCCagcata CGGCCCCA m6b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988

Mutation Mutation ID Sample Name Cancer Type
chr1:g.28537927C>T COSM1584371 TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3925-3p caaacagCTGGAGaa ACUCCAGU m6b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-452-5p cAAACAGTTggagaa AACUGUUU m8a (m7a->m8a) HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-4676-3p cAAACAGTtggagaa CACUGUUU m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-515-5p caaacagTTGGAGAa UUCUCCAA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-519d-5p caaacagTTGGAGaa CCUCCAAA m6b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-519e-5p caaacagTTGGAGAa UUCUCCAA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-5695 caaacagTTGGAGaa ACUCCAAG m6b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-766-3p caaacaGCTGGAGaa ACUCCAGC m7b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-892c-3p cAAACAGTtggagaa CACUGUUU m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-3925-3p caaacagCTGGAGaa ACUCCAGU m6b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-452-5p cAAACAGTTggagaa AACUGUUU m8a (m7a->m8a) HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-4676-3p cAAACAGTtggagaa CACUGUUU m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-515-5p caaacagTTGGAGAa UUCUCCAA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-519d-5p caaacagTTGGAGaa CCUCCAAA m6b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-519e-5p caaacagTTGGAGAa UUCUCCAA m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-5695 caaacagTTGGAGaa ACUCCAAG m6b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-766-3p caaacaGCTGGAGaa ACUCCAGC m7b Disrupted HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988
hsa-miR-892c-3p cAAACAGTtggagaa CACUGUUU m7b Created HHHNE_15208_RCC1|NM_001269|exon_CDS|-5.9826334451116|-1.25690089008988

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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