SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042552
Gene Symbol: TATDN3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.212815044C>T COSM3483178 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-93-3p tctattTCAGCAGaa ACUGCUGA m7b Disrupted HPSD3_504_G671.1_212988386
hsa-miR-6071 tctatttCAGCAGAa UUCUGCUG m7b Disrupted HPSD3_504_G671.1_212988386
hsa-miR-3692-5p tctatttCAGCAGaa CCUGCUGG m6b Disrupted HPSD3_504_G671.1_212988386

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212815038C>A COSM3418718 TCGA-EI-6917-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5680 aaCATTTCTatttca GAGAAAUG m7b (m7b->m6b) HPSD3_504_G671.1_212988386
hsa-miR-3121-3p aacattTCTATTTca UAAAUAGA m7b Disrupted HPSD3_504_G671.1_212988386

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser