SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042474
Gene Symbol: ZNF565

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.36182545C>T COSM177680 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-561-3p atcAAACTTTacgaa CAAAGUUU m7b Created HPTK7_4003_G5808.1_36673451
hsa-miR-548at-5p atcaAACTTTacgaa AAAAGUUA m6b Created HPTK7_4003_G5808.1_36673451
hsa-miR-4748 atCAAACCTtacgaa GAGGUUUG m7b (m7b->m6b) HPTK7_4003_G5808.1_36673451
hsa-miR-4464 atCAAACCTTacgaa AAGGUUUG m8a Disrupted HPTK7_4003_G5808.1_36673451

Mutation Mutation ID Sample Name Cancer Type
chr19:g.36182541C>T COSM1393054 TCGA-AD-6889-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4262 aaccttaTGAATGTa GACAUUCA m7b Created HPTK7_4003_G5808.1_36673451
hsa-miR-181d-5p aaccttaTGAATGTa AACAUUCA m7b Created HPTK7_4003_G5808.1_36673451
hsa-miR-181c-5p aaccttaTGAATGTa AACAUUCA m7b Created HPTK7_4003_G5808.1_36673451
hsa-miR-181b-5p aaccttaTGAATGTa AACAUUCA m7b Created HPTK7_4003_G5808.1_36673451
hsa-miR-181a-5p aaccttaTGAATGTa AACAUUCA m7b Created HPTK7_4003_G5808.1_36673451

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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