SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042388
Gene Symbol: PPP4R1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.9547826C>T COSM3735165 145 [upper_aerodigestive_tract][larynx][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p aaAATCTTCgaagat AGAAGAUU m7b (m6b->m7b) HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-5091 aaaaTCTCCGaagat ACGGAGAC m6b Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-5739 aaaaTCTCCGaagat GCGGAGAG m6b Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033

Mutation Mutation ID Sample Name Cancer Type
chr18:g.9547825C>T COSM4440507 Patient_1:_pre-everolimus [thyroid][NS][carcinoma][anaplastic_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4756-3p aaATCTCTGaagatg CCAGAGAU m7b (m6b->m7b) HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-5739 aaaTCTCCGaagatg GCGGAGAG m6b Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-5091 aaaTCTCCGaagatg ACGGAGAC m6b Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-3919 aaaTCTCTGaagatg GCAGAGAA m6b Created HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033

Mutation Mutation ID Sample Name Cancer Type
chr18:g.9547814T>C COSM4717248 T2948 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4642 GATGCCATgagcaca AUGGCAUC m8a Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033
hsa-miR-6847-3p gatgcCATGAGCaca GGCUCAUG m7b Disrupted HHHNE_14193_PPP4R1|NM_001042388|exon_CDS|-6.95450041053811|0.993687874460033

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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