SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040616
Gene Symbol: LINS

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569456G>T COSM282434 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-944 tctgaAATAATTTga AAAUUAUU m8a Created HPRT3_9688_G12764.1_101109646
hsa-miR-10a-3p tctgaaaGAATTTGa CAAAUUCG m7a Disrupted HPRT3_9688_G12764.1_101109646
hsa-miR-205-3p tCTGAAATaatttga GAUUUCAG m7b Created HPRT3_9688_G12764.1_101109646

Mutation Mutation ID Sample Name Cancer Type
chr15:g.100569437C>T COSM1608133 HCC53 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5703 gcCTTCTCCTttgat AGGAGAAG m8a Disrupted HPRT3_9688_G12764.1_101109646
hsa-miR-6770-5p gCCTTCTCctttgat UGAGAAGG m7b Disrupted HPRT3_9688_G12764.1_101109646
hsa-miR-4516 gcCTTCTCCtttgat GGGAGAAG m7b (m7b->m6b) HPRT3_9688_G12764.1_101109646
hsa-miR-186-5p gccttcTTCTTTGat CAAAGAAU m7a Created HPRT3_9688_G12764.1_101109646
hsa-miR-3185 gcCTTCTTCTttgat AGAAGAAG m8a Created HPRT3_9688_G12764.1_101109646
hsa-miR-4428 gcctTCTCCTTtgat CAAGGAGA m7b Disrupted HPRT3_9688_G12764.1_101109646
hsa-miR-4434 gcCTTCTCCTttgat AGGAGAAG m8a Disrupted HPRT3_9688_G12764.1_101109646

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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