SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040437
Gene Symbol: C6orf48

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839645A>G COSM3347020 TCGA-HJ-7597-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4446-5p ttggGGGAAAaatgc AUUUCCCU m6b Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-3679-3p ttGGGGGAAaaatgc CUUCCCCC m7b (m7b->m6b) HPTK7_6514_G9726.1_31807424
hsa-miR-361-3p tTGGGGGAaaaatgc UCCCCCAG m7a Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-153-5p ttgggggAAAAATGc UCAUUUUU m7b Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-1250-3p ttgggggGAAAATGc ACAUUUUC m7b Created HPTK7_6514_G9726.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839644GA>G COSM279446 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p attggggGAAAATGc ACAUUUUC m7b Created HPTK7_6514_G9726.1_31807424
hsa-miR-361-3p atTGGGGGAaaaatgc UCCCCCAG m7a (m7a->m6a) HPTK7_6514_G9726.1_31807424
hsa-miR-3679-3p attGGGGGAAaaatgc CUUCCCCC m7b Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-4446-5p attggGGGAAAaatgc AUUUCCCU m6b Disrupted HPTK7_6514_G9726.1_31807424

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31839643G>T COSM3624808 TCGA-D3-A2J8-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6802-3p tattGGGTGAAaaat UUCACCCC m7a Created HPTK7_6514_G9726.1_31807424
hsa-miR-361-3p tatTGGGGGAaaaat UCCCCCAG m7a Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-3679-3p tattGGGGGAAaaat CUUCCCCC m7b Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-4446-5p tattggGGGAAAaat AUUUCCCU m6b Disrupted HPTK7_6514_G9726.1_31807424
hsa-miR-500b-3p tatTGGGTGaaaaat GCACCCAG m6b Created HPTK7_6514_G9726.1_31807424
hsa-miR-5096 tattgGGTGAAAaat GUUUCACC m7b Created HPTK7_6514_G9726.1_31807424

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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