SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001040158
Gene Symbol: H2AFY
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.135389066T>C COSM735643 TCGA-60-2725-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-2-5p gAAGAAGCccaccaa AGCUUCUU m7b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-27a-5p gaagAAGCCCaccaa AGGGCUUA m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3165 gaagaagTCCACCaa AGGUGGAU m6b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4417 gaagaAGCCCACCaa GGUGGGCU m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-5009-5p gaagAAGTCCAccaa UUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-541-3p gaagaaGCCCACCAa UGGUGGGC m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6505-3p gaAGAAGTCcaccaa UGACUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-654-5p gaagaaGCCCACCAa UGGUGGGC m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6769a-5p gaagaagCCCACCaa AGGUGGGU m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6769b-5p gaagaagCCCACCAa UGGUGGGU m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6815-3p gaAGAAGCCcaccaa UGGCUUCU m7b (m6b->m7b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6880-5p gaagaagTCCACCAa UGGUGGAG m7a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8058 gaagAAGTCCAccaa CUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 gaagaaGTCCACCaa CGGUGGAC m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-92a-2-5p gaagaagCCCACCaa GGGUGGGG m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-103a-2-5p gAAGAAGCccaccaa AGCUUCUU m7b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-27a-5p gaagAAGCCCaccaa AGGGCUUA m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3165 gaagaagTCCACCaa AGGUGGAU m6b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4417 gaagaAGCCCACCaa GGUGGGCU m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-5009-5p gaagAAGTCCAccaa UUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-541-3p gaagaaGCCCACCAa UGGUGGGC m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6505-3p gaAGAAGTCcaccaa UGACUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-654-5p gaagaaGCCCACCAa UGGUGGGC m8a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6769a-5p gaagaagCCCACCaa AGGUGGGU m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6769b-5p gaagaagCCCACCAa UGGUGGGU m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6815-3p gaAGAAGCCcaccaa UGGCUUCU m7b (m6b->m7b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6880-5p gaagaagTCCACCAa UGGUGGAG m7a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8058 gaagAAGTCCAccaa CUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 gaagaaGTCCACCaa CGGUGGAC m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-92a-2-5p gaagaagCCCACCaa GGGUGGGG m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132

Mutation Mutation ID Sample Name Cancer Type
chr5:g.135389066AAGT>T COSM1642594 pfg019T [stomach][NS][adenocarcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3165 gaagaagTCCACCaa AGGUGGAU m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4659a-3p gaAGAAGAAgtccaccaa UUUCUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4659b-3p gaAGAAGAAgtccaccaa UUUCUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4778-3p GAAGAAGAagtccaccaa UCUUCUUC m8a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-5009-5p gaagaagAAGTCCAccaa UUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6505-3p gaagaAGAAGTCcaccaa UGACUUCU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8058 gaagaagAAGTCCAccaa CUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 gaagaaGTCCACCaa CGGUGGAC m7b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3165 gaagaagTCCACCaa AGGUGGAU m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4659a-3p gaAGAAGAAgtccaccaa UUUCUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4659b-3p gaAGAAGAAgtccaccaa UUUCUUCU m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4778-3p GAAGAAGAagtccaccaa UCUUCUUC m8a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-5009-5p gaagaagAAGTCCAccaa UUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6505-3p gaagaAGAAGTCcaccaa UGACUUCU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8058 gaagaagAAGTCCAccaa CUGGACUU m7b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 gaagaaGTCCACCaa CGGUGGAC m7b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132

Mutation Mutation ID Sample Name Cancer Type
chr5:g.135389062C>T COSM3918645 TCGA-BF-A3DM-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3134 aagTCCATCAagacg UGAUGGAU m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3165 aagTCCACCaagacg AGGUGGAU m6b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4534 aagTCCATCaagacg GGAUGGAG m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6880-5p aagTCCACCAagacg UGGUGGAG m7a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 aaGTCCACCaagacg CGGUGGAC m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8082 aagTCCATCAagacg UGAUGGAG m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3134 aagTCCATCAagacg UGAUGGAU m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-3165 aagTCCACCaagacg AGGUGGAU m6b Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-4534 aagTCCATCaagacg GGAUGGAG m6b Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-6880-5p aagTCCACCAagacg UGGUGGAG m7a Disrupted HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8071 aaGTCCACCaagacg CGGUGGAC m7b (m7b->m6b) HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132
hsa-miR-8082 aagTCCATCAagacg UGAUGGAG m7a Created HHHNE_7533_H2AFY|NM_001040158|exon_CDS|-6.27132375523913|-0.0794081841500132

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser