SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039840
Gene Symbol: CHIC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.73680984T>G COSM1125183 TCGA-BS-A0UF-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-3p caAAATATCccatat AGAUAUUU m7b (m7b->m6b) HPCB1_42910_G54922.1_72900827
hsa-miR-3201 caaaATATCCCatat GGGAUAUG m7a Disrupted HPCB1_42910_G54922.1_72900827
hsa-miR-6871-5p caaaataTCCCATat CAUGGGAG m6b Disrupted HPCB1_42910_G54922.1_72900827

Mutation Mutation ID Sample Name Cancer Type
chrX:g.73680972C>A COSM195764 TCGA-AA-3984-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6507-5p tagaATTCTTaccaa GAAGAAUA m6b Disrupted HPCB1_42910_G54922.1_72900827

Mutation Mutation ID Sample Name Cancer Type
chrX:g.73586745G>A COSN1392093 HX14T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1265 taatactACATCCTc CAGGAUGU m7b Created HPCB1_42909_G54921.1_72806580
hsa-miR-16-1-3p tAATACTGcatcctc CCAGUAUU m7b Disrupted HPCB1_42909_G54921.1_72806580
hsa-miR-7852-3p taatACTACATcctc UAUGUAGU m7b Created HPCB1_42909_G54921.1_72806580

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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