SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039547
Gene Symbol: GK5

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.142165629A>G COSM1729356 041T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-3p tatAACAGGacataa CCCUGUUC m6b Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-6834-3p tataacaGGACATAa UAUGUCCC m7a Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-654-3p tataacaAGACATAa UAUGUCUG m7a Disrupted HHRBL_10271_BCBL1-2of3-SCL_11171

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142165622A>G COSM4687052 T578 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4473 agacatAGCACTAaa CUAGUGCU m7b Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-4671-3p agacataGCACTAAa UUAGUGCA m7a Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-512-3p agacatAGCACTaaa AAGUGCUG m6b Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-520f-3p agacatAGCACTaaa AAGUGCUU m6b Created HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-4255 agacatAACACTaaa CAGUGUUC m6b Disrupted HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-3591-5p agacataACACTAAa UUUAGUGU m7b Disrupted HHRBL_10271_BCBL1-2of3-SCL_11171

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142165590C>T COSN1268837 HCC14T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5690 tagGTAGCTGgttta UCAGCUAC m7b Disrupted HHRBL_10271_BCBL1-2of3-SCL_11171
hsa-miR-5690 tagGTAGCTGgttta UCAGCUAC m7b Disrupted HHRBL_10271_BCBL1-2of3-SCL_11171

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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