SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039395
Gene Symbol: SPATA6L

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.4662826C>G COSM4621543 COLO678 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6873-5p gggcaCCCTCTactg CAGAGGGA m6b Disrupted HHHNE_14005_PPAPDC2|NM_203453|exon_CDS|-5.29991895237813|-1.07181675209236
hsa-miR-6804-5p gggCACCCTCtactg UGAGGGUG m7b Disrupted HHHNE_14005_PPAPDC2|NM_203453|exon_CDS|-5.29991895237813|-1.07181675209236
hsa-miR-483-5p gggcaCCGTCTactg AAGACGGG m6b Created HHHNE_14005_PPAPDC2|NM_203453|exon_CDS|-5.29991895237813|-1.07181675209236
hsa-miR-411-5p gggcaccGTCTACTg UAGUAGAC m7b Created HHHNE_14005_PPAPDC2|NM_203453|exon_CDS|-5.29991895237813|-1.07181675209236

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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