SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039111
Gene Symbol: TRIM71

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.32892151G>A COSN1276043 HCC85T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-96-3p gcgtgggACATGATa AAUCAUGU m7b Created HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372
hsa-miR-6834-3p gcgtGGGACATgata UAUGUCCC m7b Created HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372
hsa-miR-6516-3p gcgtgggACATGATa AUCAUGUA m7a Created HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372
hsa-miR-4758-3p gcGTGGGGCAtgata UGCCCCAC m8a Disrupted HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372
hsa-miR-4433a-5p gcGTGGGACatgata CGUCCCAC m7b (m6b->m7b) HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372
hsa-miR-4433b-5p gcgTGGGACATgata AUGUCCCA m8a Created HHHNE_19712_TRIM71|NM_001039111|exon_utr3|-2.34464946908705|-1.97277805947372

Mutation Mutation ID Sample Name Cancer Type
chr3:g.32891285G>A COSM1537633 TCGA-55-7727-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-659-3p gagaaagGAACCAAg CUUGGUUC m7b Disrupted HHHNE_19710_TRIM71|NM_001039111|exon_CDS|-3.27600655023437|1.35039090974944
hsa-miR-29b-2-5p gagaaaGAAACCAag CUGGUUUC m7b Created HHHNE_19710_TRIM71|NM_001039111|exon_CDS|-3.27600655023437|1.35039090974944
hsa-miR-218-1-3p gagaaaGGAACCAag AUGGUUCC m7b Disrupted HHHNE_19710_TRIM71|NM_001039111|exon_CDS|-3.27600655023437|1.35039090974944

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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