SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001037582
Gene Symbol: SCD5
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.82636715C>G COSM373156 LUAD-NYU284 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7846-3p ctattCTCCGCTata CAGCGGAG m7b Disrupted HPCB1_30462_G38950.1_83557864

Mutation Mutation ID Sample Name Cancer Type
chr4:g.82636714C>T COSM1619147 HCC47T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4524b-5p tattctCTGCTATac AUAGCAGC m7a Created HPCB1_30462_G38950.1_83557864
hsa-miR-4524a-5p tattctCTGCTATac AUAGCAGC m7a Created HPCB1_30462_G38950.1_83557864
hsa-miR-3919 taTTCTCTGCtatac GCAGAGAA m8a Created HPCB1_30462_G38950.1_83557864
hsa-miR-7846-3p tattCTCCGCTatac CAGCGGAG m7b Disrupted HPCB1_30462_G38950.1_83557864
hsa-miR-3123 tATTCTCTGctatac CAGAGAAU m8a (m7a->m8a) HPCB1_30462_G38950.1_83557864
hsa-miR-2467-3p tattCTCTGCTatac AGCAGAGG m7a Created HPCB1_30462_G38950.1_83557864

Mutation Mutation ID Sample Name Cancer Type
chr4:g.82636713G>A COSM2955590 SNU-175 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4727-3p attctCCACTATacc AUAGUGGG m7a Created HPCB1_30462_G38950.1_83557864
hsa-miR-4531 aTTCTCCActatacc AUGGAGAA m7b Created HPCB1_30462_G38950.1_83557864
hsa-miR-4460 attctCCACTATacc AUAGUGGU m7a Created HPCB1_30462_G38950.1_83557864
hsa-miR-7846-3p attCTCCGCTatacc CAGCGGAG m7b Disrupted HPCB1_30462_G38950.1_83557864
hsa-miR-6849-5p attcTCCACTatacc GAGUGGAU m6b Created HPCB1_30462_G38950.1_83557864

Mutation Mutation ID Sample Name Cancer Type
chr4:g.82636710A>G COSM3975074 TCGA-FG-5962-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5579-5p ctccgctGTACCATc UAUGGUAC m7b Created HPCB1_30462_G38950.1_83557864
hsa-miR-150-3p ctccgcTGTACCAtc CUGGUACA m7b Created HPCB1_30462_G38950.1_83557864

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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