SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001037540
Gene Symbol: SCML1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.17753330A>G COSM4108443 TCGA-BR-8589-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7977 GCTGGGAAcggctgt UUCCCAGC m8a Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-6743-3p gctggGAGCGGCTgt AGCCGCUC m8a Created HHHNE_16168_SCML1|NM_001037535|exon_CDS|-6.18118720416715|0.423219771769029
hsa-miR-7977 GCTGGGAAcggctgt UUCCCAGC m8a Disrupted HHHNE_16168_SCML1|NM_001037535|exon_CDS|-6.18118720416715|0.423219771769029
hsa-miR-6743-3p gctggGAGCGGCTgt AGCCGCUC m8a Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-6743-3p gctggGAGCGGCTgt AGCCGCUC m8a Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-7977 GCTGGGAAcggctgt UUCCCAGC m8a Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-6743-3p gctggGAGCGGCTgt AGCCGCUC m8a Created HHHNE_16168_SCML1|NM_001037535|exon_CDS|-6.18118720416715|0.423219771769029
hsa-miR-7977 GCTGGGAAcggctgt UUCCCAGC m8a Disrupted HHHNE_16168_SCML1|NM_001037535|exon_CDS|-6.18118720416715|0.423219771769029

Mutation Mutation ID Sample Name Cancer Type
chrX:g.17753290G>A COSM4108441 TCGA-CG-5721-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3614-5p tactcaCAAGTGacg CCACUUGG m6b Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-668-3p tactcacGAGTGACg UGUCACUC m7b Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-6500-3p tactcACAAGTGacg ACACUUGU m7b Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-4636 tactCACGAGTgacg AACUCGUG m7b Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-3614-5p tactcaCAAGTGacg CCACUUGG m6b Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-4636 tactCACGAGTgacg AACUCGUG m7b Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-6500-3p tactcACAAGTGacg ACACUUGU m7b Created HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594
hsa-miR-668-3p tactcacGAGTGACg UGUCACUC m7b Disrupted HHHNE_16167_SCML1|NM_001037535|exon_CDS|-5.55213370026425|1.38730171557594

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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