SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001035235
Gene Symbol: SRA1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550773C>T COSM241756 WA16 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-604 gaggagGCAGCCaat AGGCUGCG m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-647 gaggagGCAGCCAat GUGGCUGC m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-660-3p gAGGAGGTagccaat ACCUCCUG m7a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6762-3p gaggagGCAGCCAat UGGCUGCU m7a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6791-3p gAGGAGGCAgccaat UGCCUCCU m8a (m8a->m7a) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6829-3p gAGGAGGCAgccaat UGCCUCCU m8a (m8a->m7a) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6836-3p gaGGAGGCAgccaat AUGCCUCC m7b (m7b->m6b) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6882-3p gaggAGGCAGCcaat UGCUGCCU m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550773C>A COSM1288189 TARGET-30-PARIRD [autonomic_ganglia][NS][neuroblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4691-5p gaGGAGGAagccaat GUCCUCCA m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-516a-3p gaggAGGAAGCcaat UGCUUCCU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-516b-3p gaggAGGAAGCcaat UGCUUCCU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-5193 GAGGAGGAagccaat UCCUCCUC m8a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-604 gaggagGCAGCCaat AGGCUGCG m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-647 gaggagGCAGCCAat GUGGCUGC m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6749-3p gaGGAGGAagccaat CUCCUCCC m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6762-3p gaggagGCAGCCAat UGGCUGCU m7a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6791-3p gAGGAGGCAgccaat UGCCUCCU m8a (m8a->m7a) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6792-3p gaGGAGGAagccaat CUCCUCCA m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6815-3p gaggagGAAGCCAat UGGCUUCU m7a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6829-3p gAGGAGGCAgccaat UGCCUCCU m8a (m8a->m7a) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6836-3p gaGGAGGCAgccaat AUGCCUCC m7b (m7b->m6b) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6882-3p gaggAGGCAGCcaat UGCUGCCU m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-7162-5p gaggAGGAAGCcaat UGCUUCCU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550771G>A COSM4585451 SJDES011-R [bone][ilium][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3152-5p gGAGGCAAccaatga AUUGCCUC m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4423-5p ggAGGCAACcaatga AGUUGCCU m7b (m6b->m7b) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-604 ggagGCAGCCaatga AGGCUGCG m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-647 ggagGCAGCCAatga GUGGCUGC m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-656-5p ggaGGCAACCaatga AGGUUGCC m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6762-3p ggagGCAGCCAatga UGGCUGCU m7a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6882-3p ggAGGCAGCcaatga UGCUGCCU m7b (m7b->m6b) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550770C>T COSM3850664 TCGA-BR-4184-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3136-5p gaggCAGTCAatgaa CUGACUGA m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4439 gaggCAGTCAatgaa GUGACUGA m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-5002-3p gaGGCAGTCAatgaa UGACUGCC m8a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-604 gagGCAGCCaatgaa AGGCUGCG m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-647 gagGCAGCCAatgaa GUGGCUGC m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6762-3p gagGCAGCCAatgaa UGGCUGCU m7a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6882-3p gAGGCAGCcaatgaa UGCUGCCU m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-943 gaggCAGTCAatgaa CUGACUGU m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550760G>T COSM1433629 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4753-3p atgAAGAGAAatctg UUCUCUUU m7a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4768-5p atgaAGAGAAatctg AUUCUCUC m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6515-3p aTGAAGAGAaatctg UCUCUUCA m8a (m8a->m7a) HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6809-3p atgAAGAGAAatctg CUUCUCUU m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550757A>G COSM1633979 RK067_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-3p aagagaaGTCTGCAg CUGCAGAC m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-3166 aagagaaGTCTGCag CGCAGACA m6b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4771 aagagaAGTCTGCag AGCAGACU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-499b-5p aagagAAGTCTGcag ACAGACUU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6505-3p aagAGAAGTCtgcag UGACUUCU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-6809-3p AAGAGAAGtctgcag CUUCUCUU m8a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-942-5p aAGAGAAGtctgcag UCUUCUCU m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

Mutation Mutation ID Sample Name Cancer Type
chr5:g.140550749C>T COSM1319279 TCGA-AB-2807-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-134-5p tctgCAGTCACAgct UGUGACUG m8a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-3118 tctgCAGTCACAgct UGUGACUG m8a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4418 tCTGCAGTcacagct CACUGCAG m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4439 tctgCAGTCACagct GUGACUGA m7a Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-4474-3p tctgcAGCCACAgct UUGUGGCU m7b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-509-3-5p tCTGCAGTcacagct UACUGCAG m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-509-5p tCTGCAGTcacagct UACUGCAG m7b Created HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-604 tctGCAGCCacagct AGGCUGCG m6b Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206
hsa-miR-647 tctGCAGCCACagct GUGGCUGC m8a Disrupted HHHNE_17926_SRA1|NM_001035235|exon_CDS|-4.2400663511054|1.59368799218206

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser