SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033561
Gene Symbol: PHF12

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906890CA>A COSM1381775 TCGA-CM-4743-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1275 accCCCCCAagcagta GUGGGGGA m6b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-4665-5p accCCCCCAagcagta CUGGGGGA m6b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-6795-5p acCCCCCCAagcagta UGGGGGGA m7a (m7a->m6a) HPRT3_11326_G15001.1_27233919
hsa-miR-6803-5p accCCCCCAagcagta CUGGGGGU m6b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-6887-5p acCCCCCCAagcagta UGGGGGGA m7a (m7a->m6a) HPRT3_11326_G15001.1_27233919
hsa-miR-7109-5p acCCCCCCAagcagta CUGGGGGG m7b (m7b->m6b) HPRT3_11326_G15001.1_27233919

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906890A>CA COSM1723220 2_RESISTANT [NS][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-328-5p cCCCCCCCaagcagta GGGGGGGC m7a Created HPRT3_11326_G15001.1_27233919

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906883A>T COSM472487 TCGA-BP-4985-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1323 aagcAGTTTTGttgc UCAAAACU m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-200b-3p aagCAGTATTgttgc UAAUACUG m7b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-200c-3p aagCAGTATTgttgc UAAUACUG m7b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-3065-5p aagcagtTTTGTTGc UCAACAAA m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-429 aagCAGTATTgttgc UAAUACUG m7b Disrupted HPRT3_11326_G15001.1_27233919
hsa-miR-548a-3p aagCAGTTTTGttgc CAAAACUG m8a Created HPRT3_11326_G15001.1_27233919
hsa-miR-548ar-3p aagCAGTTTTgttgc UAAAACUG m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-548av-3p aaGCAGTTTTgttgc AAAACUGC m8a Created HPRT3_11326_G15001.1_27233919
hsa-miR-548az-3p aagCAGTTTTgttgc AAAAACUG m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-548e-3p aagCAGTTTTgttgc AAAAACUG m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-548f-3p aagCAGTTTTgttgc AAAAACUG m7b Created HPRT3_11326_G15001.1_27233919
hsa-miR-548o-3p aagcAGTTTTGttgc CCAAAACU m7b Created HPRT3_11326_G15001.1_27233919

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906882T>G COSM977048 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-200b-3p agCAGTATTgttgcc UAAUACUG m7b (m7b->m6b) HPRT3_11326_G15001.1_27233919
hsa-miR-200c-3p agCAGTATTgttgcc UAAUACUG m7b (m7b->m6b) HPRT3_11326_G15001.1_27233919
hsa-miR-429 agCAGTATTgttgcc UAAUACUG m7b (m7b->m6b) HPRT3_11326_G15001.1_27233919

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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