SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033561
Gene Symbol: PHF12

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906216G>A COSM3515525 TCGA-EE-A3JI-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1291 cccacCAGGGCCctg UGGCCCUG m7b Disrupted HPKMA_6665_G7728.1_27233235
hsa-miR-4456 cCCACCAGGgccctg CCUGGUGG m8a (m8a->m7a) HPKMA_6665_G7728.1_27233235
hsa-miR-4512 cccaccaAGGCCCTg CAGGGCCU m7b Created HPKMA_6665_G7728.1_27233235
hsa-miR-6775-3p cccacCAGGGCCctg AGGCCCUG m7b Disrupted HPKMA_6665_G7728.1_27233235
hsa-miR-7160-3p cccaccaGGGCCCTg CAGGGCCC m7b Disrupted HPKMA_6665_G7728.1_27233235

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906211C>T COSM224525 ME011T [skin][extremity][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3918 cagGGCCCTGTgctg ACAGGGCC m8a Disrupted HPKMA_6665_G7728.1_27233235
hsa-miR-3922-5p cagGGCCTTGtgctg UCAAGGCC m7b Created HPKMA_6665_G7728.1_27233235
hsa-miR-4457 cagggCCTTGTGctg UCACAAGG m7b Created HPKMA_6665_G7728.1_27233235
hsa-miR-7160-3p caGGGCCCTGtgctg CAGGGCCC m8a Disrupted HPKMA_6665_G7728.1_27233235

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906208T>C COSM3362054 TCGA-AK-3425-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6132 gGCCCTGCgctgcgc AGCAGGGC m7b Created HPKMA_6665_G7728.1_27233235
hsa-miR-6836-5p gGCCCTGCGctgcgc CGCAGGGC m8a (m7a->m8a) HPKMA_6665_G7728.1_27233235

Mutation Mutation ID Sample Name Cancer Type
chr17:g.28906202G>A COSM4444577 C91 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-5p gtgctgCACTCCAac UGGAGUGU m7a Created HPKMA_6665_G7728.1_27233235
hsa-miR-3198 gtgctgcACTCCAac GUGGAGUC m6b Created HPKMA_6665_G7728.1_27233235
hsa-miR-3944-5p gtGCTGCACtccaac UGUGCAGC m7b (m6b->m7b) HPKMA_6665_G7728.1_27233235
hsa-miR-4309 gtgctgcACTCCAac CUGGAGUC m6b Created HPKMA_6665_G7728.1_27233235
hsa-miR-504-3p gtgctGCACTCCaac GGGAGUGC m7b Created HPKMA_6665_G7728.1_27233235
hsa-miR-6874-5p gtgctgcGCTCCAac AUGGAGCU m6b Disrupted HPKMA_6665_G7728.1_27233235

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser