SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001033521
Gene Symbol: CSTF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399024G>A COSM1412620 TCGA-AD-6964-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3168 acttgtcAGAACTCa GAGUUCUA m7a Created HPTA3_11882_G18809.1_54974080
hsa-miR-6874-3p acttgtCAGAACTca CAGUUCUG m7b Created HPTA3_11882_G18809.1_54974080
hsa-miR-6730-3p actTGTCAGaactca CCUGACAC m6b Created HPTA3_11882_G18809.1_54974080
hsa-miR-6719-3p actTGTCAGAactca UCUGACAU m7a Created HPTA3_11882_G18809.1_54974080
hsa-miR-4526 actTGTCAGaactca GCUGACAG m6b Created HPTA3_11882_G18809.1_54974080
hsa-miR-4256 acttGTCAGAactca AUCUGACC m6b Created HPTA3_11882_G18809.1_54974080
hsa-miR-3660 actTGTCAGaactca ACUGACAG m6b Created HPTA3_11882_G18809.1_54974080
hsa-miR-148b-5p acttgtCAGAACTca AAGUUCUG m7b Created HPTA3_11882_G18809.1_54974080

Mutation Mutation ID Sample Name Cancer Type
chr20:g.56399023C>T COSM4581901 EWS834 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser