SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001025603
Gene Symbol: RFX5
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.151344274T>C COSM2183444 RKO [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3908 cagatATTGCTacag GAGCAAUG m6b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-3942-5p cagaTATTGCTacag AAGCAAUA m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-4703-5p cagaTATTGCTAcag UAGCAAUA m8a Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-4766-3p cagatATTGCTAcag AUAGCAAU m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151344268A>T COSM3801825 TCGA-A2-A3Y0-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 ttgCTACAGTGgcat CACUGUAG m8a Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-3064-3p ttgctacTGTGGCAt UUGCCACA m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-3137 ttGCTACAGtggcat UCUGUAGC m7b (m7b->m6b) HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-4252 ttgctaCAGTGGCat GGCCACUG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151344238A>G COSM2183443 COLO678 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-891a-3p ggtgtctGTGCCACc AGUGGCAC m7b Created HHRBL_949_BCBL1-2of3-SCL_9291

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151344230C>A COSM1264064 ESO-0129 [oesophagus][lower_third][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-5p tgccacCCCTGCCtg UGGCAGGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-1909-3p tgccaCCCCTGCctg CGCAGGGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-2682-5p tgccaccACTGCCTg CAGGCAGU m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-34a-5p tgccacCACTGCCtg UGGCAGUG m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-34b-5p tgccaccACTGCCTg UAGGCAGU m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-34c-5p tgccacCACTGCCTg AGGCAGUG m8a Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-449a tgccacCACTGCCtg UGGCAGUG m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-449b-5p tgccacCACTGCCTg AGGCAGUG m8a Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-449c-5p tgccaccACTGCCTg UAGGCAGU m7b Created HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-4651 tgCCACCCCtgcctg CGGGGUGG m7b (m7b->m6b) HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-4763-3p tgccacCCCTGCCTg AGGCAGGG m8a Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-608 tgCCACCCCTgcctg AGGGGUGG m8a Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-6722-3p tgccaCCCCTGCctg UGCAGGGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-6782-5p tgcCACCCCTgcctg UAGGGGUG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-6808-5p tgccaccCCTGCCTg CAGGCAGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-6893-5p tgccaccCCTGCCTg CAGGCAGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291
hsa-miR-940 tgccaccCCTGCCTg AAGGCAGG m7b Disrupted HHRBL_949_BCBL1-2of3-SCL_9291

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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