SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001025603
Gene Symbol: RFX5
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.151346487C>T COSN212418
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4297 gaGAAGGCAagtggt UGCCUUCC m7a (m7a->m6a) HHHNA_1736_RFX5|NM_000449|exon_utr5|-5.73886058052522|0.923594303024001
hsa-miR-4724-3p gaGAAGGTAagtggt GUACCUUC m7b (m6b->m7b) HHHNA_1736_RFX5|NM_000449|exon_utr5|-5.73886058052522|0.923594303024001
hsa-miR-5581-5p gaGAAGGCaagtggt AGCCUUCC m6b Disrupted HHHNA_1736_RFX5|NM_000449|exon_utr5|-5.73886058052522|0.923594303024001

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151343827C>T COSM1223619 TCGA-HF-7132-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-603 gaggcAGTGTGTGcc CACACACU m8a Created HHHNA_1734_RFX5|NM_000449|exon_CDS|-5.71015617101826|0.520472442811205
hsa-miR-6882-3p gAGGCAGCgtgtgcc UGCUGCCU m7b Disrupted HHHNA_1734_RFX5|NM_000449|exon_CDS|-5.71015617101826|0.520472442811205
hsa-miR-6890-3p gaGGCAGTGtgtgcc CCACUGCC m7b (m6b->m7b) HHHNA_1734_RFX5|NM_000449|exon_CDS|-5.71015617101826|0.520472442811205

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151343813T>G COSM4721245 T3225 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181d-3p cctgaCCGGTGactg CCACCGGG m6b Created HHHNA_1734_RFX5|NM_000449|exon_CDS|-5.71015617101826|0.520472442811205
hsa-miR-513a-5p cctgaCCTGTGActg UUCACAGG m7b Disrupted HHHNA_1734_RFX5|NM_000449|exon_CDS|-5.71015617101826|0.520472442811205

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151342406G>T COSM4721243 T2197 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-296-5p ggaggaaGGGGCCCc AGGGCCCC m7b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-3127-3p ggagGAAGGGGcccc UCCCCUUC m7b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-3667-3p ggAGGAAGGggcccc ACCUUCCU m7b (m7b->m6b) HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-6756-3p ggagGAAGGGGcccc UCCCCUUC m7b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151342394C>T COSM4762607 pfg122T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-204-3p cccggTTCCCAGCat GCUGGGAA m8a Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-3135b cccggttTCCAGCat GGCUGGAG m6b Created HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-4261 cccgGTTTCCagcat AGGAAACA m6b Created HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-4646-5p cccggTTCCCAGcat ACUGGGAA m7b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-5589-5p cccggttCCCAGCat GGCUGGGU m6b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-619-5p cccggtTCCCAGCat GCUGGGAU m7a Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-8059 cccgGTTCCCagcat GGGGAACU m6b Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-875-3p cccggTTTCCAGcat CCUGGAAA m7b Created HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151342385C>T COSM1688521 YUCROFT [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-190a-5p cagCATATCAaagaa UGAUAUGU m7a Created HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-190b cagCATATCAaagaa UGAUAUGU m7a Created HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434
hsa-miR-9-5p cagcatACCAAAGAa UCUUUGGU m8a Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434

Mutation Mutation ID Sample Name Cancer Type
chr1:g.151342384C>T COSM4470325 CSCC-55-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-9-5p agcatACCAAAGAag UCUUUGGU m8a Disrupted HHHNA_1733_RFX5|NM_000449|exon_CDS|-5.71142268241082|1.52820498989434

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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