SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001025
Gene Symbol: RPS23
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277803A>C COSM3856662 TCGA-BR-8680-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3663-5p accgacgAGACCAGa GCUGGUCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6843-3p accgacGAGACCAga AUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6848-3p accgacGAGACCAga GUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3663-5p accgacgAGACCAGa GCUGGUCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6843-3p accgacGAGACCAga AUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6848-3p accgacGAGACCAga GUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277800C>G COSM4769073 XHDG25 [biliary_tract][gallbladder][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3663-5p gacgAGACCAGaagt GCUGGUCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6828-3p gacgaGAGCAGAagt AUCUGCUC m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6843-3p gacGAGACCAgaagt AUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6848-3p gacGAGACCAgaagt GUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-7152-3p gacgaGACCAGAagt UCUGGUCC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-767-3p gacgaGAGCAGAagt UCUGCUCA m7a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3663-5p gacgAGACCAGaagt GCUGGUCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6828-3p gacgaGAGCAGAagt AUCUGCUC m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6843-3p gacGAGACCAgaagt AUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6848-3p gacGAGACCAgaagt GUGGUCUC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-7152-3p gacgaGACCAGAagt UCUGGUCC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-767-3p gacgaGAGCAGAagt UCUGCUCA m7a Created HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277759G>A COSM267359 TCGA-AA-3672-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-3p caTTTGGGCacagcc GCCCAAAG m7a (m7a->m6a) HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6889-3p catttgGGCACAGcc UCUGUGCC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277754G>A COSM3856659 TCGA-BR-4201-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1296-5p gggcacaGCCCTAAa UUAGGGCC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-2909 gggcacaGCCCTAAa GUUAGGGC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-296-3p gggcaCAACCCTaaa GAGGGUUG m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3158-3p gggcacAGCCCTaaa AAGGGCUU m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4446-3p gggcaCAGCCCTaaa CAGGGCUG m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4675 gggcACAGCCCtaaa GGGGCUGU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4741 gggcACAGCCCtaaa CGGGCUGU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5001-5p gggcaCAGCCCTaaa AGGGCUGG m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5088-5p gggcacAGCCCTaaa CAGGGCUC m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6889-3p gGGCACAGccctaaa UCUGUGCC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-7974 gggCACAGCCctaaa AGGCUGUG m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-1296-5p gggcacaGCCCTAAa UUAGGGCC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-2909 gggcacaGCCCTAAa GUUAGGGC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-296-3p gggcaCAACCCTaaa GAGGGUUG m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3158-3p gggcacAGCCCTaaa AAGGGCUU m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4446-3p gggcaCAGCCCTaaa CAGGGCUG m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4675 gggcACAGCCCtaaa GGGGCUGU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4741 gggcACAGCCCtaaa CGGGCUGU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5001-5p gggcaCAGCCCTaaa AGGGCUGG m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5088-5p gggcacAGCCCTaaa CAGGGCUC m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6889-3p gGGCACAGccctaaa UCUGUGCC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-7974 gggCACAGCCctaaa AGGCUGUG m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277741A>C COSM197104 TCGA-AA-3977-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-296-3p aaggcCAACCCTttt GAGGGUUG m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3936 aaggccACCCCTTtt UAAGGGGU m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4651 aaggCCACCCCtttt CGGGGUGG m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-608 aaggCCACCCCTttt AGGGGUGG m8a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6782-5p aaggcCACCCCTttt UAGGGGUG m7b Created HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277731A>T COSM4722682 T2269 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1306-5p cttttGGAGGTGctt CCACCUCC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29a-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29b-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29c-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-519d-5p ctTTTGGAGGtgctt CCUCCAAA m8a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-1306-5p cttttGGAGGTGctt CCACCUCC m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29a-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29b-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-29c-3p cttttggTGGTGCTt UAGCACCA m7b Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-519d-5p ctTTTGGAGGtgctt CCUCCAAA m8a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277721C>T COSM3139473 TCGA-C5-A1MK-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p tgcttctTATGCAAa UUGCAUAG m7a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3653-3p tgCTTCTTAtgcaaa CUAAGAAG m7b (m6b->m7b) HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-448 tgcttctTATGCAAa UUGCAUAU m7a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4666b tgcttctCATGCAAa UUGCAUGU m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5011-3p tgcttctCATGCAaa GUGCAUGG m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6076 tgcttcTCATGCaaa AGCAUGAC m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6797-3p tgcttcTCATGCAaa UGCAUGAC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-153-3p tgcttctTATGCAAa UUGCAUAG m7a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-3653-3p tgCTTCTTAtgcaaa CUAAGAAG m7b (m6b->m7b) HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-448 tgcttctTATGCAAa UUGCAUAU m7a Created HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-4666b tgcttctCATGCAAa UUGCAUGU m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-5011-3p tgcttctCATGCAaa GUGCAUGG m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6076 tgcttcTCATGCaaa AGCAUGAC m6b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-6797-3p tgcttcTCATGCAaa UGCAUGAC m7a Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277707C>T COSM4827042 TCGA-C5-A1MK-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-3p aAGGAATCgtgctgg GGAUUCCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863
hsa-miR-145-3p aAGGAATCgtgctgg GGAUUCCU m7b Disrupted HHRBL_11457_BCBL1-2of3-SCL_863

Mutation Mutation ID Sample Name Cancer Type
chr5:g.82277695A>G COSM4155910 C0026T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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