SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024843
Gene Symbol: TNRC6B
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr22:g.40325655G>A COSN1262158 HX4T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-5p tctgtgTAGAGCaaa CGCUCUAG m6b Created HHHNA_15796_TNRC6B|NM_015088|exon_utr3|-6.79911755832393|-0.100492429859182
hsa-miR-5691 tctgtgtAGAGCAAa UUGCUCUG m7a Created HHHNA_15796_TNRC6B|NM_015088|exon_utr3|-6.79911755832393|-0.100492429859182
hsa-miR-6502-5p tctgtgTAGAGCaaa AGCUCUAG m6b Created HHHNA_15796_TNRC6B|NM_015088|exon_utr3|-6.79911755832393|-0.100492429859182
hsa-miR-6772-3p tctgtgtGGAGCAAa UUGCUCCU m7a Disrupted HHHNA_15796_TNRC6B|NM_015088|exon_utr3|-6.79911755832393|-0.100492429859182
hsa-miR-6805-3p tctgtgtAGAGCAAa UUGCUCUG m7a Created HHHNA_15796_TNRC6B|NM_015088|exon_utr3|-6.79911755832393|-0.100492429859182

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40324588G>T COSN5455986 RK040_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1253 tcccTCTTCTCcttt AGAGAAGA m7b Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-2467-3p tcCCTCTGCTccttt AGCAGAGG m8a Disrupted HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-4428 tccctctTCTCCTTt CAAGGAGA m7b Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-4434 tccctCTTCTCCTtt AGGAGAAG m8a Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-4468 tcccTCTGCTCcttt AGAGCAGA m7b Disrupted HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-4516 tccctCTTCTCCttt GGGAGAAG m7b Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-5197-3p tccCTCTTCTccttt AAGAAGAG m7b Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-5703 tccctCTTCTCCTtt AGGAGAAG m8a Created HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-6081 tccctCTGCTCCTtt AGGAGCAG m8a Disrupted HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779
hsa-miR-6873-5p TCCCTCTGctccttt CAGAGGGA m8a Disrupted HHHNA_15795_TNRC6B|NM_015088|exon_utr3|-6.82262918961077|-1.18668416662779

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40323328C>T COSN10030680 C0061T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-137 caacttGCAATAAat UUAUUGCU m7a Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-25-3p caactTGCAATaaat CAUUGCAC m6b Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-32-5p caactTGCAATAaat UAUUGCAC m7a Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-363-3p caactTGCAATaaat AAUUGCAC m6b Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-367-3p caactTGCAATaaat AAUUGCAC m6b Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-556-3p caacttGTAATAaat AUAUUACC m6b Created HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-6504-3p caactTGTAATaaat CAUUACAG m6b Created HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-6882-5p caACTTGTAataaat UACAAGUC m7a (m6a->m7a) HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-92a-3p caactTGCAATAaat UAUUGCAC m7a Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385
hsa-miR-92b-3p caactTGCAATAaat UAUUGCAC m7a Disrupted HHHNA_15788_TNRC6B|NM_015088|exon_utr3|-6.51321227881456|1.69755607926385

Mutation Mutation ID Sample Name Cancer Type
chr22:g.40323202A>T COSM3371920 TCGA-DJ-A2PW-01 [thyroid][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-196a-5p ctttACTACCTggtg UAGGUAGU m7b Disrupted HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-196b-5p ctttACTACCTggtg UAGGUAGU m7b Disrupted HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-548ao-5p ctTTACTTCctggtg AGAAGUAA m7b (m6b->m7b) HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-548ax ctTTACTTCctggtg AGAAGUAA m7b (m6b->m7b) HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-196a-5p ctttACTACCTggtg UAGGUAGU m7b Disrupted HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-196b-5p ctttACTACCTggtg UAGGUAGU m7b Disrupted HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-548ao-5p ctTTACTTCctggtg AGAAGUAA m7b (m6b->m7b) HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686
hsa-miR-548ax ctTTACTTCctggtg AGAAGUAA m7b (m6b->m7b) HHHNA_15787_TNRC6B|NM_015088|exon_CDS|-6.78497210551983|2.23879730672686

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser