SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024809
Gene Symbol: RARA
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.40356565C>T COSN7166379 8044594 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8073 cagcaaaTGCCAGGa ACCUGGCA m7b Created HPCB1_16862_G21222.1_38512814
hsa-miR-1256 cagcaAATGCCagga AGGCAUUG m6b Created HPCB1_16862_G21222.1_38512814
hsa-miR-1282 caGCAAACGccagga UCGUUUGC m7b (m7b->m6b) HPCB1_16862_G21222.1_38512814
hsa-miR-221-5p cagcaaaTGCCAGGa ACCUGGCA m7b Created HPCB1_16862_G21222.1_38512814
hsa-miR-4720-5p cagcaaATGCCAGGa CCUGGCAU m8a Created HPCB1_16862_G21222.1_38512814
hsa-miR-4799-3p cagcaaATGCCAGga ACUGGCAU m7b Created HPCB1_16862_G21222.1_38512814
hsa-miR-5588-5p cagcaaATGCCAGga ACUGGCAU m7b Created HPCB1_16862_G21222.1_38512814

Mutation Mutation ID Sample Name Cancer Type
chr17:g.40356541C>G COSN15618736
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7855-5p cccagCTCACCAcat UUGGUGAG m7b Disrupted HPCB1_16862_G21222.1_38512814
hsa-miR-3160-3p ccCAGCTCaccacat AGAGCUGA m6b Disrupted HPCB1_16862_G21222.1_38512814
hsa-miR-4487 cCCAGCTCaccacat AGAGCUGG m7b Disrupted HPCB1_16862_G21222.1_38512814
hsa-miR-4710 cccagCTCACCacat GGGUGAGG m6b Disrupted HPCB1_16862_G21222.1_38512814
hsa-miR-4792 cccaGCTCACCacat CGGUGAGC m7b Disrupted HPCB1_16862_G21222.1_38512814
hsa-miR-1207-3p cCCAGCTGAccacat UCAGCUGG m8a (m7a->m8a) HPCB1_16862_G21222.1_38512814

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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