SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024688
Gene Symbol: NBN
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.89982731A>T COSM1553464 TCGA-55-8089-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-5p tttCTGTTACcaacc UGUAACAG m7b Created HPCB1_40322_G51553.1_90994965
hsa-miR-409-5p tttctGTAACCaacc AGGUUACC m6b Disrupted HPCB1_40322_G51553.1_90994965
hsa-miR-487a-5p tttctgTAACCAacc GUGGUUAU m6b Disrupted HPCB1_40322_G51553.1_90994965
hsa-miR-487b-5p tttctgTAACCAacc GUGGUUAU m6b Disrupted HPCB1_40322_G51553.1_90994965

Mutation Mutation ID Sample Name Cancer Type
chr8:g.89935439A>G COSN1369560 BN28T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7157-3p atGCACAGAactttg UCUGUGCU m7a (m6a->m7a) HPCB1_40315_G51546.1_90947671
hsa-miR-6889-3p atGCACAGAactttg UCUGUGCC m7a (m6a->m7a) HPCB1_40315_G51546.1_90947671
hsa-miR-6874-3p atgcaCAGAACTttg CAGUUCUG m7b Created HPCB1_40315_G51546.1_90947671
hsa-miR-6737-3p atGCACAGAactttg UCUGUGCU m7a (m6a->m7a) HPCB1_40315_G51546.1_90947671
hsa-miR-561-3p atgcacaAAACTTTg CAAAGUUU m7b Disrupted HPCB1_40315_G51546.1_90947671
hsa-miR-148b-5p atgcaCAGAACTTtg AAGUUCUG m8a Created HPCB1_40315_G51546.1_90947671
hsa-miR-2113 atGCACAAAactttg AUUUGUGC m7b (m7b->m6b) HPCB1_40315_G51546.1_90947671
hsa-miR-148a-5p atgcacAGAACTTTg AAAGUUCU m8a Created HPCB1_40315_G51546.1_90947671
hsa-miR-5008-3p atGCACAGaactttg CCUGUGCU m6b Created HPCB1_40315_G51546.1_90947671

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser