SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024678
Gene Symbol: LRRC24

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.144523194C>G COSM3412869 TCGA-32-1991-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1224-5p agGTCCTCACccagg GUGAGGAC m8a Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-1262 aggtccTCACCCAgg AUGGGUGA m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-4436a agGTCCTGacccagg GCAGGACA m6b Created HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-4701-3p aggtccTCACCCAgg AUGGGUGA m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-4710 aggtCCTCACCCagg GGGUGAGG m8a Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-6736-5p aggtccTCACCCAGg CUGGGUGA m8a Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-6776-5p aggtcctCACCCAGg UCUGGGUG m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501

Mutation Mutation ID Sample Name Cancer Type
chr8:g.144523179C>G COSM486222 TCGA-BP-5192-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-5p tggcagGGAACCCgc GGGGUUCC m7b Created HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-23b-5p tggcagGGAACCCgc UGGGUUCC m7b Created HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-4423-5p tggcAGGCAACccgc AGUUGCCU m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-4763-5p tGGCAGGCaacccgc CGCCUGCC m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-642b-5p tggcAGGGAACCcgc GGUUCCCU m8a Created HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-6514-3p tggCAGGCAacccgc CUGCCUGU m6b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-656-5p tggcaGGCAACCcgc AGGUUGCC m7b Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-670-5p tggCAGGGAacccgc GUCCCUGA m6b Created HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-6752-3p tGGCAGGGAacccgc UCCCUGCC m8a (m7a->m8a) HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501
hsa-miR-6894-3p tgGCAGGCAAcccgc UUGCCUGC m8a Disrupted HHHNA_21899_LRRC14|NM_014665|exon_utr3|-2.96071411701417|-0.999767247409501

Mutation Mutation ID Sample Name Cancer Type
chr8:g.144523116C>G COSM750285 TCGA-46-6026-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3918 cGGCCCTGgcgaggc ACAGGGCC m7b Created HHHNA_21898_LRRC14|NM_014665|exon_utr3|-2.97399918116058|-0.973197119116691
hsa-miR-4685-5p cgGCCCTGGcgaggc CCCAGGGC m7b (m6b->m7b) HHHNA_21898_LRRC14|NM_014665|exon_utr3|-2.97399918116058|-0.973197119116691
hsa-miR-6837-5p cgGCCCTGGcgaggc ACCAGGGC m7b (m6b->m7b) HHHNA_21898_LRRC14|NM_014665|exon_utr3|-2.97399918116058|-0.973197119116691

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser