SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024401
Gene Symbol: SBK1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.28320325G>T COSM557244 TCGA-44-2668-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4676-5p cgccgACTGGCTggc GAGCCAGU m7b Created HHHNE_16059_SBK1|NM_001024401|exon_CDS|-1.849518714277|1.01880723764639
hsa-miR-575 cgccgACTGGCTggc GAGCCAGU m7b Created HHHNE_16059_SBK1|NM_001024401|exon_CDS|-1.849518714277|1.01880723764639

Mutation Mutation ID Sample Name Cancer Type
chr16:g.28320313G>T COSM367154 LUAD-F00282 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4485-5p cCAGGCGGgccgcgc ACCGCCUG m7b Disrupted HHHNE_16059_SBK1|NM_001024401|exon_CDS|-1.849518714277|1.01880723764639
hsa-miR-4707-3p ccaGGCGGGCcgcgc AGCCCGCC m7b Disrupted HHHNE_16059_SBK1|NM_001024401|exon_CDS|-1.849518714277|1.01880723764639

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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